Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G157300.1 | Wheat | nucleus | 96.73 | 97.01 |
| TraesCS5D01G164600.1 | Wheat | nucleus | 95.83 | 93.88 |
| Os09t0106700-01 | Rice | nucleus | 71.43 | 75.24 |
| Zm00001d005300_P001 | Maize | nucleus | 61.31 | 72.28 |
| HORVU5Hr1G049880.1 | Barley | plastid | 89.29 | 70.75 |
| Zm00001d019712_P001 | Maize | nucleus | 72.62 | 70.72 |
| EER98550 | Sorghum | nucleus | 76.49 | 70.22 |
| KRH05621 | Soybean | nucleus | 47.92 | 60.07 |
| GSMUA_Achr4P20150_001 | Banana | nucleus | 47.32 | 59.11 |
| VIT_07s0129g01050.t01 | Wine grape | nucleus | 52.38 | 56.41 |
| KRH61351 | Soybean | nucleus | 42.86 | 55.6 |
| KRH15420 | Soybean | nucleus | 44.64 | 54.95 |
| GSMUA_Achr3P13070_001 | Banana | nucleus | 47.32 | 54.83 |
| KRH57983 | Soybean | nucleus | 47.92 | 54.58 |
| GSMUA_Achr1P26140_001 | Banana | nucleus | 45.54 | 54.26 |
| KRH28419 | Soybean | nucleus | 47.92 | 54.21 |
| CDY22442 | Canola | nucleus | 43.75 | 53.45 |
| KRH77058 | Soybean | nucleus | 48.51 | 53.44 |
| PGSC0003DMT400008569 | Potato | nucleus | 50.0 | 52.5 |
| GSMUA_Achr1P09750_001 | Banana | nucleus | 46.13 | 52.19 |
| VIT_18s0001g09850.t01 | Wine grape | nucleus | 48.51 | 52.08 |
| Solyc04g078420.1.1 | Tomato | nucleus | 50.6 | 51.83 |
| Bra032176.1-P | Field mustard | nucleus | 44.94 | 51.71 |
| CDY38933 | Canola | nucleus | 44.94 | 51.71 |
| CDY44045 | Canola | nucleus | 43.75 | 51.58 |
| CDX89554 | Canola | nucleus | 44.35 | 50.85 |
| VIT_03s0180g00210.t01 | Wine grape | nucleus | 45.83 | 50.83 |
| GSMUA_Achr9P22600_001 | Banana | nucleus | 43.45 | 50.69 |
| GSMUA_Achr4P09450_001 | Banana | nucleus | 45.54 | 50.66 |
| GSMUA_Achr8P25220_001 | Banana | nucleus | 44.35 | 50.34 |
| CDX75635 | Canola | nucleus | 44.64 | 50.17 |
| CDY12830 | Canola | nucleus | 37.5 | 49.8 |
| Bra012149.1-P | Field mustard | nucleus | 43.75 | 49.66 |
| GSMUA_Achr4P12950_001 | Banana | nucleus | 39.29 | 49.62 |
| Bra017813.1-P | Field mustard | nucleus | 38.99 | 49.43 |
| CDY29542 | Canola | nucleus | 38.99 | 49.43 |
| GSMUA_AchrUn_... | Banana | nucleus | 41.37 | 49.12 |
| CDX72621 | Canola | nucleus | 38.69 | 49.06 |
| CDX69287 | Canola | nucleus | 44.64 | 49.02 |
| TraesCS6A01G173800.1 | Wheat | nucleus | 43.45 | 48.99 |
| CDY01420 | Canola | nucleus | 37.8 | 48.29 |
| CDY23023 | Canola | nucleus | 41.67 | 48.28 |
| GSMUA_Achr3P28230_001 | Banana | nucleus | 41.37 | 48.26 |
| Bra010593.1-P | Field mustard | nucleus | 43.75 | 48.2 |
| TraesCS7A01G526600.1 | Wheat | nucleus | 41.37 | 47.77 |
| AT5G67300.1 | Thale cress | nucleus | 42.86 | 47.21 |
| Bra012910.1-P | Field mustard | nucleus | 41.07 | 47.1 |
| CDY02098 | Canola | nucleus | 41.07 | 47.1 |
| AT2G23290.1 | Thale cress | nucleus | 42.86 | 46.6 |
| Solyc02g092930.1.1 | Tomato | nucleus | 50.0 | 46.54 |
| PGSC0003DMT400064306 | Potato | mitochondrion, nucleus | 50.89 | 46.09 |
| CDY57355 | Canola | nucleus | 38.1 | 46.04 |
| Bra011749.1-P | Field mustard | nucleus | 44.94 | 46.04 |
| Bra036048.1-P | Field mustard | nucleus | 36.31 | 45.86 |
| CDY30608 | Canola | nucleus | 36.01 | 45.66 |
| AT4G37260.1 | Thale cress | nucleus | 43.45 | 45.62 |
| TraesCS7A01G526500.1 | Wheat | nucleus | 40.18 | 45.45 |
| AT3G50060.1 | Thale cress | nucleus | 40.18 | 44.85 |
| Bra029990.1-P | Field mustard | nucleus | 38.39 | 43.88 |
| TraesCS4A01G047900.1 | Wheat | nucleus | 22.32 | 39.47 |
| CDX68566 | Canola | nucleus | 33.63 | 35.99 |
| TraesCS4A01G006100.1 | Wheat | nucleus | 26.79 | 32.97 |
| TraesCS1A01G223600.1 | Wheat | nucleus | 30.36 | 30.82 |
| TraesCS3A01G187800.1 | Wheat | nucleus | 23.21 | 24.0 |
| TraesCS4A01G211100.1 | Wheat | nucleus | 19.05 | 23.19 |
| TraesCS4A01G262500.3 | Wheat | nucleus | 18.45 | 22.46 |
| TraesCS3A01G365200.1 | Wheat | nucleus | 28.57 | 20.78 |
| TraesCS3A01G439500.1 | Wheat | nucleus | 19.05 | 18.08 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G159600.1 | EnsemblPlantsGene:TraesCS5A01G159600 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF940 | PFAM:PF00249 | PFscan:PS51294 | PRINTS:PR01217 | SEG:seg | SMART:SM00717 |
| SUPFAM:SSF46689 | TIGR:cd00167 | MapMan:15.5.2.1 | : | : | : |
Description
No Description!
Coordinates
chr5A:-:340269007..340270322
Molecular Weight (calculated)
35877.6 Da
IEP (calculated)
9.010
GRAVY (calculated)
-0.614
Length
336 amino acids
Sequence
(BLAST)
(BLAST)
001: MAACRGGGGG KDVDRIKGPW SPEEDDALQR LVGRHGARNW SLISKSIPGQ SGKSCRLRWC NQLSPQVEHR PFTPDEDDTI LRAHARFGNK WATIARLLSG
101: RTDNAIKNHW NSTLKRKYSS SSSASASPAD DAMANDDEDR RPLKRTSSDG YPGLCFSPGS PSGSDLSDSS HQSLPSVMPS AASQQPHVYR PVARAGGVVV
201: LPTATPQPSP PCPSPPPPPP PPATSLSLSL SLPGLDAPEP APVAQPMSMP PPPPPAPVQP AAAPQMPPPP PMPFMLQPPP QPQPRAAAPF NGEFLSMMQE
301: MIRIEVRNYM SGFDPRSSPA DGVHAAKRMM SMAKIE
101: RTDNAIKNHW NSTLKRKYSS SSSASASPAD DAMANDDEDR RPLKRTSSDG YPGLCFSPGS PSGSDLSDSS HQSLPSVMPS AASQQPHVYR PVARAGGVVV
201: LPTATPQPSP PCPSPPPPPP PPATSLSLSL SLPGLDAPEP APVAQPMSMP PPPPPAPVQP AAAPQMPPPP PMPFMLQPPP QPQPRAAAPF NGEFLSMMQE
301: MIRIEVRNYM SGFDPRSSPA DGVHAAKRMM SMAKIE
001: MSNPTRKNME RIKGPWSPEE DDLLQRLVQK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS PEVEHRAFSQ EEDETIIRAH ARFGNKWATI SRLLNGRTDN
101: AIKNHWNSTL KRKCSVEGQS CDFGGNGGYD GNLGEEQPLK RTASGGGGVS TGLYMSPGSP SGSDVSEQSS GGAHVFKPTV RSEVTASSSG EDPPTYLSLS
201: LPWTDETVRV NEPVQLNQNT VMDGGYTAEL FPVRKEEQVE VEEEEAKGIS GGFGGEFMTV VQEMIRTEVR SYMADLQRGN VGGSSSGGGG GGSCMPQSVN
301: SRRVGFREFI VNQIGIGKME
101: AIKNHWNSTL KRKCSVEGQS CDFGGNGGYD GNLGEEQPLK RTASGGGGVS TGLYMSPGSP SGSDVSEQSS GGAHVFKPTV RSEVTASSSG EDPPTYLSLS
201: LPWTDETVRV NEPVQLNQNT VMDGGYTAEL FPVRKEEQVE VEEEEAKGIS GGFGGEFMTV VQEMIRTEVR SYMADLQRGN VGGSSSGGGG GGSCMPQSVN
301: SRRVGFREFI VNQIGIGKME
Arabidopsis Description
MYB73MYB73 [Source:UniProtKB/TrEMBL;Acc:A0A178V4E7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.