Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G457500.1 | Wheat | plastid | 99.51 | 99.02 |
| TraesCS5B01G466700.1 | Wheat | plastid | 99.02 | 98.54 |
| Os08t0560900-01 | Rice | extracellular, plastid | 84.8 | 85.22 |
| EER93246 | Sorghum | plastid | 83.82 | 85.07 |
| Zm00001d034543_P001 | Maize | plastid | 78.92 | 80.9 |
| KRG91274 | Soybean | nucleus, plastid | 74.02 | 74.38 |
| GSMUA_Achr5P14780_001 | Banana | plastid | 74.02 | 72.95 |
| KRH35533 | Soybean | plastid | 75.0 | 72.86 |
| PGSC0003DMT400030843 | Potato | cytosol, extracellular, plastid | 73.04 | 71.98 |
| GSMUA_Achr4P17120_001 | Banana | plastid | 72.06 | 71.01 |
| Solyc06g054260.1.1 | Tomato | plastid | 72.06 | 70.67 |
| VIT_05s0020g03180.t01 | Wine grape | plastid | 70.59 | 70.59 |
| VIT_07s0151g01000.t01 | Wine grape | plastid | 70.1 | 70.1 |
| Zm00001d013039_P001 | Maize | plastid | 78.43 | 67.8 |
| AT4G02770.1 | Thale cress | plastid | 69.12 | 67.79 |
| AT1G03130.1 | Thale cress | plastid | 67.65 | 67.65 |
| CDY22079 | Canola | plastid | 44.12 | 60.0 |
| HORVU5Hr1G109710.2 | Barley | cytosol, plastid | 70.1 | 52.19 |
| CDY21916 | Canola | plastid | 71.57 | 51.96 |
| Bra036240.1-P | Field mustard | plastid | 70.59 | 51.61 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G468400.1 | EnsemblPlantsGene:TraesCS5D01G468400 | Gene3D:3.30.1470.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009522 | GO:GO:0009538 | GO:GO:0009579 | GO:GO:0009987 |
| GO:GO:0015979 | GO:GO:0016020 | InterPro:PsaD | InterPro:PsaD_sf | PANTHER:PTHR31982 | PANTHER:PTHR31982:SF4 |
| PFAM:PF02531 | SEG:seg | SUPFAM:SSF64234 | MapMan:1.1.4.2.4 | : | : |
Description
No Description!
Coordinates
chr5D:+:509673047..509673661
Molecular Weight (calculated)
21789.2 Da
IEP (calculated)
10.231
GRAVY (calculated)
-0.303
Length
204 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMATQASAA TRHLITAAWS PSAKPRPATL GMPSARGPAP LCAAAPDTPA PAAPPAEPAP AGFVPPQLDP STPSPIFGGS TGGLLRKAQV EEFYVITWTS
101: PKEQVFEMPT GGAAIMREGP NLLKLARKEQ CLALGNRLRS KYKIAYQFYR VFPNGEVQYL HPKDGVYPEK VNAGRQGVGQ NFRSIGKNVS PIEVKFTGKN
201: SFDI
101: PKEQVFEMPT GGAAIMREGP NLLKLARKEQ CLALGNRLRS KYKIAYQFYR VFPNGEVQYL HPKDGVYPEK VNAGRQGVGQ NFRSIGKNVS PIEVKFTGKN
201: SFDI
001: MATQAAGIFS PAITTTTSAV KKLHLFSSSH RPKSLSFTKT AIRAEKTESS SAAPAVKEAP VGFTPPQLDP NTPSPIFAGS TGGLLRKAQV EEFYVITWNS
101: PKEQIFEMPT GGAAIMREGP NLLKLARKEQ CLALGTRLRS KYKITYQFYR VFPNGEVQYL HPKDGVYPEK ANPGREGVGL NMRSIGKNVS PIEVKFTGKQ
201: SYDL
101: PKEQIFEMPT GGAAIMREGP NLLKLARKEQ CLALGTRLRS KYKITYQFYR VFPNGEVQYL HPKDGVYPEK ANPGREGVGL NMRSIGKNVS PIEVKFTGKQ
201: SYDL
Arabidopsis Description
PSAD2Photosystem I reaction center subunit II-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SA56]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.