Factsheet for TraesCS4A01G319000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G130200.1
TraesCS1D01G183000.1
TraesCS4A01G472500.1
TraesCS5A01G457500.1
TraesCS5B01G466700.1
TraesCS5D01G009100.1
TraesCS5D01G221600.1
TraesCS5D01G468400.1
TraesCS6A01G009200.1
TraesCS6A01G192500.1
TraesCS6B01G015000.1
TraesCS6D01G012200.1
TraesCS7A01G020500.1
TraesCS7A01G325400.1
TraesCS7A01G325500.1
TraesCS7B01G226100.1
TraesCS7B01G226200.1
TraesCS7D01G016800.1
TraesCS7D01G322000.1
TraesCS7D01G322100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22890.1	TraesCS4A01G472500.1	AT1G20020.1	18243102
AT4G22890.1	TraesCS6A01G009200.1	AT1G20020.1	18243102
AT4G22890.1	TraesCS6B01G015000.1	AT1G20020.1	18243102
AT4G22890.1	TraesCS6D01G012200.1	AT1G20020.1	18243102
AT4G22890.1	TraesCS7A01G020500.1	AT1G20020.1	18243102
AT4G22890.1	TraesCS7D01G016800.1	AT1G20020.1	18243102
AT4G22890.1	TraesCS7A01G325400.1	AT1G60950.1	18243102
AT4G22890.1	TraesCS7A01G325500.1	AT1G60950.1	18243102
AT4G22890.1	TraesCS7B01G226100.1	AT1G60950.1	18243102
AT4G22890.1	TraesCS7B01G226200.1	AT1G60950.1	18243102
AT4G22890.1	TraesCS7D01G322000.1	AT1G60950.1	18243102
AT4G22890.1	TraesCS7D01G322100.1	AT1G60950.1	18243102
AT4G22890.1	TraesCS5A01G457500.1	AT4G02770.1	18243102
AT4G22890.1	TraesCS5B01G466700.1	AT4G02770.1	18243102
AT4G22890.1	TraesCS5D01G468400.1	AT4G02770.1	18243102
AT4G22890.1	TraesCS4A01G472500.1	AT5G66190.1	18243102
AT4G22890.1	TraesCS6A01G009200.1	AT5G66190.1	18243102
AT4G22890.1	TraesCS6B01G015000.1	AT5G66190.1	18243102
AT4G22890.1	TraesCS6D01G012200.1	AT5G66190.1	18243102
AT4G22890.1	TraesCS7A01G020500.1	AT5G66190.1	18243102
AT4G22890.1	TraesCS7D01G016800.1	AT5G66190.1	18243102
AT4G22890.1	TraesCS1A01G130200.1	ATCG00720.1	18243102
AT4G22890.1	TraesCS1D01G183000.1	ATCG00720.1	18243102
AT4G22890.1	TraesCS5D01G009100.1	ATCG00720.1	18243102
AT4G22890.1	TraesCS5D01G221600.1	ATCG00720.1	18243102
AT4G22890.1	TraesCS6A01G192500.1	ATCG00720.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G560400.1	Wheat	plastid	95.08	95.08
HORVU5Hr1G124210.2	Barley	plastid	94.15	93.86
TraesCS5D01G569800.1	Wheat	plastid	92.31	92.59
Zm00001d034904_P001	Maize	plastid	55.08	78.17
Zm00001d034900_P001	Maize	plastid	70.15	70.81
Os03t0857400-01	Rice	plasma membrane	68.0	68.21
GSMUA_Achr4P28830_001	Banana	cytosol, peroxisome, plasma membrane	57.54	66.31
GSMUA_Achr2P12240_001	Banana	plastid	64.31	66.14
KRH26378	Soybean	plasma membrane	29.23	64.19
PGSC0003DMT400058521	Potato	plastid	61.85	62.81
KRH77457	Soybean	plastid	60.92	62.66
AT4G22890.1	Thale cress	plastid	61.85	62.04
CDY41285	Canola	plastid	60.62	61.76
CDY10819	Canola	plastid	60.62	61.76
Bra013653.1-P	Field mustard	plastid	60.62	61.76
CDY68977	Canola	plastid	60.31	61.25
Bra019349.1-P	Field mustard	plastid	60.31	61.25
PGSC0003DMT400032525	Potato	plastid	60.0	61.13
Bra000757.1-P	Field mustard	plastid	60.0	60.94
CDX94134	Canola	plastid	60.0	60.94
CDX90812	Canola	plastid	60.0	60.94
KRH57278	Soybean	plastid	60.0	60.75
Solyc08g080050.2.1	Tomato	plastid	57.23	60.39
CDY51552	Canola	plastid	59.38	60.31
VIT_02s0025g04710.t01	Wine grape	plastid	60.31	60.12
KRH04003	Soybean	plastid	60.92	59.64
AT4G11960.1	Thale cress	plastid	57.23	59.42
Solyc08g007770.2.1	Tomato	plastid	56.0	59.28
KXG37086	Sorghum	plastid	69.54	55.66

Protein Annotations

EnsemblPlants:TraesCS4A01G319000.1	EnsemblPlantsGene:TraesCS4A01G319000	PANTHER:PTHR31032	PANTHER:PTHR31032:SF1	SEG:seg	TMHMM:TMhelix
MapMan:1.1.6.1.2	:	:	:	:	:

Description

No Description!

Coordinates

chr4A:+:607633308..607635652

Molecular Weight (calculated)

35820.1 Da

IEP (calculated)

4.955

GRAVY (calculated)

-0.039

Length

325 amino acids

Sequence
(BLAST)

001: MATEVVALSP ASRLPSLSSR PNALAASSSR SRAPRGARAP SSPLALTTST GHRRKALLLL RPRATEQQGQ VQQQDEEVVD GNVLPYCSID GKKKKTIGEM
101: EQEFLRALQS FYYDQKAIMS NEEFDNLKEE LMWEGSSVVM LSADEQRLLE ASIAYIAGNP IMSDAEFDEL KLRLKQDGSD IVTEGPRCSL RSRKVYSDLT
201: VDYLKMFLLN VPATIVALGL FFFIDELTGF EVNVFQFPEP FGFIFTYFAA LPLILVTAQV VTKAIINDVL ILKGPCPNCG TENLSFYGTI LSIESGGATN
301: NVKCANCKTV MVYDSKTRLI TLPDS

Best Arabidopsis Sequence Match ( AT4G22890.1 )
(BLAST)

001: MGSKMLFSLT SPRLFSAVSR KPSSSFSPSP PSPSSRTQWT QLSPGKSISL RRRVFLLPAK ATTEQSGPVG GDNVDSNVLP YCSINKAEKK TIGEMEQEFL
101: QALQSFYYDG KAIMSNEEFD NLKEELMWEG SSVVMLSSDE QRFLEASMAY VSGNPILNDE EYDKLKLKLK IDGSDIVSEG PRCSLRSKKV YSDLAVDYFK
201: MLLLNVPATV VALGLFFFLD DITGFEITYI MELPEPYSFI FTWFAAVPVI VYLALSITKL IIKDFLILKG PCPNCGTENT SFFGTILSIS SGGKTNTVKC
301: TNCGTAMVYD SGSRLITLPE GSQA

Arabidopsis Description

PGRL1APGR5-LIKE A [Source:UniProtKB/TrEMBL;Acc:A0A178UU76]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.