CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71257
CDX81408
CDX83730
CDX83820
CDY03773
CDY12877
CDY18592
CDY21916
CDY22079
CDY33318
CDY43420
CDY44833
CDY46194
CDY54579
CDY54581
CDY55097
CDY57601
CDY57760
CDY62940

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22890.1	CDX83730	AT1G20020.1	18243102
AT4G22890.1	CDY43420	AT1G20020.1	18243102
AT4G22890.1	CDY57601	AT1G20020.1	18243102
AT4G22890.1	CDY62940	AT1G20020.1	18243102
AT4G22890.1	CDY03773	AT1G60950.1	18243102
AT4G22890.1	CDY12877	AT1G60950.1	18243102
AT4G22890.1	CDY33318	AT1G60950.1	18243102
AT4G22890.1	CDY44833	AT1G60950.1	18243102
AT4G22890.1	CDY46194	AT1G60950.1	18243102
AT4G22890.1	CDY54579	AT1G60950.1	18243102
AT4G22890.1	CDY54581	AT1G60950.1	18243102
AT4G22890.1	CDY21916	AT4G02770.1	18243102
AT4G22890.1	CDY22079	AT4G02770.1	18243102
AT4G22890.1	CDX81408	AT5G66190.1	18243102
AT4G22890.1	CDX83820	AT5G66190.1	18243102
AT4G22890.1	CDY18592	AT5G66190.1	18243102
AT4G22890.1	CDY55097	AT5G66190.1	18243102
AT4G22890.1	CDY57760	AT5G66190.1	18243102
AT4G22890.1	CDX71257	ATCG00720.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013653.1-P	Field mustard	plastid	100.0	100.0
CDY10819	Canola	plastid	98.75	98.75
CDY68977	Canola	plastid	90.28	90.0
CDX94134	Canola	plastid	87.77	87.5
AT4G22890.1	Thale cress	plastid	84.01	82.72
CDY51552	Canola	plastid	76.8	76.56
CDX90812	Canola	plastid	76.49	76.25
Zm00001d034904_P001	Maize	plastid	52.04	72.49
GSMUA_Achr4P28830_001	Banana	cytosol, peroxisome, plasma membrane	63.64	71.99
VIT_02s0025g04710.t01	Wine grape	plastid	72.41	70.86
KRH57278	Soybean	plastid	70.85	70.41
KRH04003	Soybean	plastid	72.41	69.58
KRH77457	Soybean	plastid	68.34	68.99
KRH26378	Soybean	plasma membrane	31.97	68.92
PGSC0003DMT400058521	Potato	plastid	68.65	68.44
PGSC0003DMT400032525	Potato	plastid	68.03	68.03
Solyc08g007770.2.1	Tomato	plastid	63.64	66.12
Solyc08g080050.2.1	Tomato	plastid	63.64	65.91
GSMUA_Achr2P12240_001	Banana	plastid	65.2	65.82
Os08t0526300-02	Rice	plastid	65.2	63.22
Os03t0857400-01	Rice	plasma membrane	63.95	62.96
Zm00001d034900_P001	Maize	plastid	63.32	62.73
KXG34948	Sorghum	plastid	63.64	61.14
TraesCS5D01G569800.1	Wheat	plastid	62.07	61.11
TraesCS5B01G560400.1	Wheat	plastid	62.07	60.92
HORVU5Hr1G124210.2	Barley	plastid	62.07	60.74
TraesCS4A01G319000.1	Wheat	plastid	61.76	60.62
Zm00001d019454_P001	Maize	plastid	63.32	60.3
KXG37086	Sorghum	plastid	62.7	49.26
Os08t0310500-00	Rice	plastid	12.85	31.3

Protein Annotations

EnsemblPlants:CDY41285	EnsemblPlantsGene:GSBRNA2T00072712001	GO:A0A078HRP6	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR31032	PANTHER:PTHR31032:SF1	ProteinID:CDY41285	ProteinID:CDY41285.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI00025458FA	UniProt:A0A078HRP6	MapMan:1.1.6.1.2	:	:	:

Description

BnaA01g12540DBnaA01g12540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HRP6]

Coordinates

chrLK032494:-:209029..210751

Molecular Weight (calculated)

35343.5 Da

IEP (calculated)

4.734

GRAVY (calculated)

-0.017

Length

319 amino acids

Sequence
(BLAST)

001: MGSKMLFSLT SPRLFSAVSR KPTTSFSSPS SSRTQWAPLS PGRSVPLRKR FFLLPSKATT EQSGQAGGED VDSNIMPYCS INKAEKKTIG EMEQEFLQAM
101: QSFYYDGKAI MSNEEFDNLK EELMWEGSSV VMLSSDEQRF LEASMAYVSG NPILNDQEFD QLKLKLKMDG SEIVCEGPRC SLRSKKVYSD LAVDYFKMLL
201: LNVPASVVAL GLFFFLDDIT GFEITYILEL SEPFSFIFTW FAAVPLIVYL ASSITKLIIK DFLILKGPCP NCGTENVSFF GTILSISSGG KTNNVKCTNC
301: GTAMEYDSGS RLITLPEAS

Best Arabidopsis Sequence Match ( AT4G22890.1 )
(BLAST)

001: MGSKMLFSLT SPRLFSAVSR KPSSSFSPSP PSPSSRTQWT QLSPGKSISL RRRVFLLPAK ATTEQSGPVG GDNVDSNVLP YCSINKAEKK TIGEMEQEFL
101: QALQSFYYDG KAIMSNEEFD NLKEELMWEG SSVVMLSSDE QRFLEASMAY VSGNPILNDE EYDKLKLKLK IDGSDIVSEG PRCSLRSKKV YSDLAVDYFK
201: MLLLNVPATV VALGLFFFLD DITGFEITYI MELPEPYSFI FTWFAAVPVI VYLALSITKL IIKDFLILKG PCPNCGTENT SFFGTILSIS SGGKTNTVKC
301: TNCGTAMVYD SGSRLITLPE GSQA

Arabidopsis Description

PGRL1APGR5-LIKE A [Source:UniProtKB/TrEMBL;Acc:A0A178UU76]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.