Factsheet for PGSC0003DMT400032525

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
mitochondrion 3
nucleus 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009192
PGSC0003DMT400011522
PGSC0003DMT400030843
PGSC0003DMT400031198
PGSC0003DMT400049986
PGSC0003DMT400087715

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22890.1	PGSC0003DMT400011522	AT1G60950.1	18243102
AT4G22890.1	PGSC0003DMT400031198	AT1G60950.1	18243102
AT4G22890.1	PGSC0003DMT400087715	AT1G60950.1	18243102
AT4G22890.1	PGSC0003DMT400030843	AT4G02770.1	18243102
AT4G22890.1	PGSC0003DMT400009192	AT5G66190.1	18243102
AT4G22890.1	PGSC0003DMT400049986	ATCG00720.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g007770.2.1	Tomato	plastid	89.66	93.16
PGSC0003DMT400058521	Potato	plastid	79.0	78.75
GSMUA_Achr4P28830_001	Banana	cytosol, peroxisome, plasma membrane	67.08	75.89
KRH26378	Soybean	plasma membrane	34.48	74.32
VIT_02s0025g04710.t01	Wine grape	plastid	74.92	73.31
Bra000757.1-P	Field mustard	plastid	72.73	72.5
CDX90812	Canola	plastid	72.73	72.5
Zm00001d034904_P001	Maize	plastid	52.04	72.49
CDY51552	Canola	plastid	72.41	72.19
KRH57278	Soybean	plastid	72.1	71.65
CDY68977	Canola	plastid	71.16	70.94
Bra019349.1-P	Field mustard	plastid	71.16	70.94
AT4G11960.1	Thale cress	plastid	69.59	70.93
GSMUA_Achr2P12240_001	Banana	plastid	70.22	70.89
KRH77457	Soybean	plastid	69.91	70.57
CDX94134	Canola	plastid	70.53	70.31
KRH04003	Soybean	plastid	72.73	69.88
AT4G22890.1	Thale cress	plastid	70.53	69.44
CDY10819	Canola	plastid	68.03	68.03
Bra013653.1-P	Field mustard	plastid	68.03	68.03
CDY41285	Canola	plastid	68.03	68.03
Os03t0857400-01	Rice	plasma membrane	65.52	64.51
Os08t0526300-02	Rice	plastid	65.52	63.53
Zm00001d034900_P001	Maize	plastid	63.64	63.04
Zm00001d019454_P001	Maize	plastid	65.83	62.69
KXG34948	Sorghum	plastid	65.2	62.65
TraesCS5D01G569800.1	Wheat	plastid	62.07	61.11
TraesCS5B01G560400.1	Wheat	plastid	62.07	60.92
HORVU5Hr1G124210.2	Barley	plastid	61.44	60.12
TraesCS4A01G319000.1	Wheat	plastid	61.13	60.0
KXG37086	Sorghum	plastid	62.38	49.01
Os08t0310500-00	Rice	plastid	9.4	22.9

Protein Annotations

EnsemblPlants:PGSC0003DMT400032525	EnsemblPlantsGene:PGSC0003DMG400012494	EntrezGene:102584115	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR31032	PANTHER:PTHR31032:SF1	PGSC:PGSC0003DMG400012494	RefSeq:XP_006358383.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI000296E37A	UniProt:M1AXK7	MapMan:1.1.6.1.2	:	:	:

Description

PGR5 1A, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400012494]

Coordinates

chr8:-:145904..149388

Molecular Weight (calculated)

35758.2 Da

IEP (calculated)

4.965

GRAVY (calculated)

-0.051

Length

319 amino acids

Sequence
(BLAST)

001: MATKFGFTIT TSSRLFHAPF RKKPIFSPNS VSPLINFGGR KLSIRRRLLF LSPKATTDQP GQVKEDEIED SKILQYCSID GKGKKSLGEM EQEFLQALQS
101: FYYEGKAMMS NEEFDNLKEE LMWEGSSVVM LSPDEQRFLE ASMAYVSGNP IMTDEEYDKL KMKLKRDGSN IVVEGPRCSL RSRKVYSDLS VDYLKMFLLN
201: VPAAVVALGL FFFLDDLTGF EITYLLELPE PFSFIFTWFA ALPLILWLSF TITNAIVKDF LILKGPCPNC GTENTSFFGT ILSVSNGGSS NKVKCSCCGT
301: DLVYDSDTRL ITLPEGSSA

Best Arabidopsis Sequence Match ( AT4G22890.1 )
(BLAST)

001: MGSKMLFSLT SPRLFSAVSR KPSSSFSPSP PSPSSRTQWT QLSPGKSISL RRRVFLLPAK ATTEQSGPVG GDNVDSNVLP YCSINKAEKK TIGEMEQEFL
101: QALQSFYYDG KAIMSNEEFD NLKEELMWEG SSVVMLSSDE QRFLEASMAY VSGNPILNDE EYDKLKLKLK IDGSDIVSEG PRCSLRSKKV YSDLAVDYFK
201: MLLLNVPATV VALGLFFFLD DITGFEITYI MELPEPYSFI FTWFAAVPVI VYLALSITKL IIKDFLILKG PCPNCGTENT SFFGTILSIS SGGKTNTVKC
301: TNCGTAMVYD SGSRLITLPE GSQA

Arabidopsis Description

PGRL1APGR5-LIKE A [Source:UniProtKB/TrEMBL;Acc:A0A178UU76]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.