CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91274
KRH08061
KRH26360
KRH28804
KRH35533
KRH69775
KRH75043

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22890.1	KRH26360	AT1G60950.1	18243102
AT4G22890.1	KRG91274	AT4G02770.1	18243102
AT4G22890.1	KRH35533	AT4G02770.1	18243102
AT4G22890.1	KRH08061	AT5G66190.1	18243102
AT4G22890.1	KRH28804	AT5G66190.1	18243102
AT4G22890.1	KRH69775	AT5G66190.1	18243102
AT4G22890.1	KRH75043	ATCG00720.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034904_P001	Maize	plastid	68.24	44.1
KRH77457	Soybean	plastid	91.22	42.72
GSMUA_Achr4P28830_001	Banana	cytosol, peroxisome, plasma membrane	70.95	37.23
KRH57278	Soybean	plastid	75.68	34.89
PGSC0003DMT400032525	Potato	plastid	74.32	34.48
PGSC0003DMT400058521	Potato	plastid	74.32	34.38
KRH04003	Soybean	plastid	75.0	33.43
VIT_02s0025g04710.t01	Wine grape	plastid	72.97	33.13
Bra000757.1-P	Field mustard	plastid	71.62	33.12
CDX90812	Canola	plastid	71.62	33.12
CDY51552	Canola	plastid	71.62	33.12
AT4G11960.1	Thale cress	plastid	68.92	32.59
Bra019349.1-P	Field mustard	plastid	69.59	32.19
CDY68977	Canola	plastid	69.59	32.19
AT4G22890.1	Thale cress	plastid	70.27	32.1
Zm00001d034900_P001	Maize	plastid	69.59	31.99
Bra013653.1-P	Field mustard	plastid	68.92	31.97
CDY41285	Canola	plastid	68.92	31.97
CDY10819	Canola	plastid	68.92	31.97
GSMUA_Achr2P12240_001	Banana	plastid	68.24	31.96
CDX94134	Canola	plastid	68.92	31.88
Os03t0857400-01	Rice	plasma membrane	68.92	31.48
Os08t0526300-02	Rice	plastid	68.92	31.0
Zm00001d019454_P001	Maize	plastid	68.92	30.45
Solyc08g007770.2.1	Tomato	plastid	62.84	30.29
KXG34948	Sorghum	plastid	67.57	30.12
Solyc08g080050.2.1	Tomato	plastid	62.16	29.87
TraesCS5D01G569800.1	Wheat	plastid	64.19	29.32
TraesCS4A01G319000.1	Wheat	plastid	64.19	29.23
TraesCS5B01G560400.1	Wheat	plastid	64.19	29.23
HORVU5Hr1G124210.2	Barley	plastid	64.19	29.14
KXG37086	Sorghum	plastid	68.92	25.12
Os08t0310500-00	Rice	plastid	4.05	4.58

Protein Annotations

EMBL:ACUP02007709	EnsemblPlants:KRH26378	EnsemblPlantsGene:GLYMA_12G170600	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR31032	PANTHER:PTHR31032:SF1	ProteinID:KRH26378	ProteinID:KRH26378.1	TMHMM:TMhelix	UniParc:UPI0006ED9E2D
UniProt:A0A0R0H6U1	MapMan:1.1.6.1.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:32560643..32562195

Molecular Weight (calculated)

16535.0 Da

IEP (calculated)

5.186

GRAVY (calculated)

0.150

Length

148 amino acids

Sequence
(BLAST)

001: MEGSEIVAEG PRCSLRSRKC PVCDYLKMFL LNVPETVVAL GLFFFLDDVT GFEISYLIKP FSFILTWSAA IPFNLWLAQS ITRATVQDFF ILKGPCPNYG
101: TENTSFFKTI LSVSSGDSTN KVKCENCETK MVYDSKTRLI TLPEGSNA

Best Arabidopsis Sequence Match ( AT4G22890.5 )
(BLAST)

001: MGSKMLFSLT SPRLFSAVSR KPSSSFSPSP PSPSSRTQWT QLSPGKSISL RRRVFLLPAK ATTEQSVGGD NVDSNVLPYC SINKAEKKTI GEMEQEFLQA
101: LQSFYYDGKA IMSNEEFDNL KEELMWEGSS VVMLSSDEQR FLEASMAYVS GNPILNDEEY DKLKLKLKID GSDIVSEGPR CSLRSKKVYS DLAVDYFKML
201: LLNVPATVVA LGLFFFLDDI TGFEITYIME LPEPYSFIFT WFAAVPVIVY LALSITKLII KDFLILKGPC PNCGTENTSF FGTILSISSG GKTNTVKCTN
301: CGTAMVYDSG SRLITLPEGS QA

Arabidopsis Description

PGRL1APGR5-LIKE A [Source:UniProtKB/TrEMBL;Acc:A0A178UU76]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.