CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03466
KRH04003
KRH26378
KRH54542
KRH56919
KRH57278
KRH63357
KRH77457

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10960.1	KRH03466	AT3G47620.1	21798944
AT1G10960.1	KRH54542	AT3G47620.1	21798944
AT1G10960.1	KRH56919	AT3G47620.1	21798944
AT1G10960.1	KRH63357	AT3G47620.1	21798944
AT1G60950.1	KRH04003	AT4G22890.1	18243102
AT1G60950.1	KRH26378	AT4G22890.1	18243102
AT1G60950.1	KRH57278	AT4G22890.1	18243102
AT1G60950.1	KRH77457	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44081	Soybean	cytosol	49.66	72.28
KRH43040	Soybean	nucleus, plastid	66.67	68.06
KRH26361	Soybean	nucleus	67.35	67.35
KRH59154	Soybean	nucleus, plastid	65.31	65.31
Zm00001d035002_P001	Maize	plastid	60.54	64.49
Bra027109.1-P	Field mustard	plastid	64.63	64.19
Bra031471.1-P	Field mustard	plastid	64.63	64.19
CDY03773	Canola	plastid	64.63	64.19
CDY12877	Canola	plastid	64.63	64.19
CDY46194	Canola	plastid	64.63	64.19
CDY44833	Canola	plastid	64.63	64.19
CDY54581	Canola	plastid	63.95	63.51
CDY54579	Canola	plastid	63.95	63.51
AT1G10960.1	Thale cress	plastid	62.59	62.16
CDX97925	Canola	plastid	62.59	62.16
AT1G60950.1	Thale cress	plastid	62.59	62.16
KRH26359	Soybean	mitochondrion, plastid	73.47	62.07
CDY20591	Canola	plastid	61.9	61.49
TraesCS7B01G226200.1	Wheat	plastid	59.18	61.27
TraesCS7D01G322100.1	Wheat	plastid	58.5	60.99
Bra018415.1-P	Field mustard	plastid	61.22	60.81
TraesCS7A01G325500.1	Wheat	plastid	58.5	60.56
EES13198	Sorghum	plastid	59.18	60.42
HORVU7Hr1G077750.1	Barley	plastid	57.82	60.28
CDY33318	Canola	plastid	60.54	60.14
CDY20975	Canola	plastid	60.54	60.14
EES13199	Sorghum	plastid	57.82	59.44
KXG24178	Sorghum	plastid	59.86	58.28
HORVU7Hr1G077740.1	Barley	plastid	56.46	58.04
TraesCS7D01G322000.1	Wheat	plastid	56.46	58.04
TraesCS7B01G226100.1	Wheat	plastid	55.78	57.34
TraesCS7A01G325400.1	Wheat	plastid	55.78	57.34
Zm00001d035001_P001	Maize	plastid	58.5	57.33
Os08t0104600-02	Rice	extracellular	53.74	56.83
CDY19334	Canola	plastid	53.06	56.12
Zm00001d035003_P001	Maize	plastid	53.06	55.71
KRH36019	Soybean	plastid	53.74	51.3
Bra040469.1-P	Field mustard	plastid	60.54	51.15
KRG90740	Soybean	plastid	53.06	50.65
KRH25235	Soybean	plastid	51.7	50.33
Zm00001d049732_P001	Maize	plastid	53.06	50.32
KRH30423	Soybean	plastid	49.66	47.1
KRH27637	Soybean	mitochondrion, plastid	31.97	31.97
KRH77855	Soybean	plastid	31.29	31.29
KRH04332	Soybean	mitochondrion, plastid	29.25	24.02
KRH58205	Soybean	mitochondrion, plastid	27.89	22.91

Protein Annotations

MapMan:1.1.5.1	EntrezGene:100500372	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30
EMBL:ACUP02007708	EMBL:BT091296	InterPro:Beta-grasp_dom_sf	UniProt:C6T1J0	InterPro:Fd_pln	EnsemblPlantsGene:GLYMA_12G169500
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0022900	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537
GO:GO:0055114	InterPro:IPR001041	InterPro:IPR012675	EnsemblPlants:KRH26360	ProteinID:KRH26360	ProteinID:KRH26360.1
PFAM:PF00111	ScanProsite:PS00197	PFscan:PS51085	PANTHER:PTHR43112	PANTHER:PTHR43112:SF4	SUPFAM:SSF54292
TIGRFAMs:TIGR02008	UniParc:UPI0001B158BA	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:32442724..32443604

Molecular Weight (calculated)

15591.6 Da

IEP (calculated)

4.435

GRAVY (calculated)

0.016

Length

147 amino acids

Sequence
(BLAST)

001: MATTPGLCGS VLLSTSFLRK QAMASVNMRM LKANAGVFGL KGGRGGRVSA MASYNVKLIT PEGEQEFECP DDVFILEKAE EFGIDLPYSC KAGACSSCAG
101: KVVSGKVDQS DGSYLDDTQI GNGFVLTCVA YPTSDVVIQT HQEDELF

Best Arabidopsis Sequence Match ( AT1G60950.1 )
(BLAST)

001: MASTALSSAI VGTSFIRRSP APISLRSLPS ANTQSLFGLK SGTARGGRVT AMATYKVKFI TPEGELEVEC DDDVYVLDAA EEAGIDLPYS CRAGSCSSCA
101: GKVVSGSVDQ SDQSFLDDEQ IGEGFVLTCA AYPTSDVTIE THKEEDIV

Arabidopsis Description

FD2Ferredoxin [Source:UniProtKB/TrEMBL;Acc:A0A178W2W5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.