Factsheet for Zm00001d035002_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

extracellular: 20408568
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d018045_P001
Zm00001d019454_P001
Zm00001d034900_P001
Zm00001d034904_P001
Zm00001d037221_P001
Zm00001d038652_P003
Zm00001d044836_P001
Zm00001d052256_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10960.1	Zm00001d018045_P001	AT3G47620.1	21798944
AT1G10960.1	Zm00001d037221_P001	AT3G47620.1	21798944
AT1G10960.1	Zm00001d044836_P001	AT3G47620.1	21798944
AT1G10960.1	Zm00001d052256_P001	AT3G47620.1	21798944
AT1G10960.1	Zm00001d038652_P003	AT5G42980.1	15352244
AT1G60950.1	Zm00001d019454_P001	AT4G22890.1	18243102
AT1G60950.1	Zm00001d034900_P001	AT4G22890.1	18243102
AT1G60950.1	Zm00001d034904_P001	AT4G22890.1	18243102
AT1G60950.1	Zm00001d038652_P003	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035001_P001	Maize	plastid	86.23	79.33
Os08t0104600-02	Rice	extracellular	76.81	76.26
EES13199	Sorghum	plastid	77.54	74.83
KXG24178	Sorghum	plastid	80.43	73.51
TraesCS7D01G322100.1	Wheat	plastid	74.64	73.05
HORVU7Hr1G077750.1	Barley	plastid	74.64	73.05
TraesCS7B01G226200.1	Wheat	plastid	74.64	72.54
TraesCS7A01G325500.1	Wheat	plastid	74.64	72.54
GSMUA_Achr8P32490_001	Banana	cytosol	34.78	69.57
TraesCS7B01G226100.1	Wheat	plastid	71.74	69.23
TraesCS7A01G325400.1	Wheat	plastid	71.74	69.23
Zm00001d035003_P001	Maize	plastid	69.57	68.57
TraesCS7D01G322000.1	Wheat	plastid	71.01	68.53
HORVU7Hr1G077740.1	Barley	plastid	71.01	68.53
KRH44081	Soybean	cytosol	48.55	66.34
KRH26360	Soybean	nucleus, plastid	64.49	60.54
PGSC0003DMT400011522	Potato	plastid	57.25	58.09
CDY54579	Canola	plastid	61.59	57.43
CDY54581	Canola	plastid	61.59	57.43
CDY46194	Canola	plastid	61.59	57.43
CDY44833	Canola	plastid	61.59	57.43
CDY12877	Canola	plastid	61.59	57.43
CDY03773	Canola	plastid	61.59	57.43
Bra031471.1-P	Field mustard	plastid	61.59	57.43
Bra027109.1-P	Field mustard	plastid	61.59	57.43
KRH26361	Soybean	nucleus	60.87	57.14
AT1G60950.1	Thale cress	plastid	60.87	56.76
PGSC0003DMT400087715	Potato	cytosol, plastid	42.75	56.73
Solyc01g103920.2.1	Tomato	plastid	57.25	56.43
Zm00001d049732_P001	Maize	plastid	63.04	56.13
VIT_12s0035g00270.t01	Wine grape	plastid	57.25	55.63
PGSC0003DMT400031198	Potato	cytosol, extracellular, plastid	57.97	55.56
KRH43040	Soybean	nucleus, plastid	57.97	55.56
AT1G10960.1	Thale cress	plastid	59.42	55.41
CDY20591	Canola	plastid	58.7	54.73
KRH59154	Soybean	nucleus, plastid	57.97	54.42
Solyc10g044520.1.1	Tomato	plastid	56.52	54.17
CDY33318	Canola	plastid	57.97	54.05
CDY20975	Canola	plastid	57.97	54.05
Bra018415.1-P	Field mustard	plastid	57.97	54.05
CDY19334	Canola	plastid	54.35	53.96
CDX97925	Canola	plastid	57.25	53.38
Solyc10g075160.1.1	Tomato	plastid	55.07	52.78
KRH26359	Soybean	mitochondrion, plastid	62.32	49.43
Zm00001d003797_P001	Maize	plastid	53.62	47.74
Zm00001d034760_P001	Maize	mitochondrion, plastid	52.17	47.37
Zm00001d025352_P001	Maize	plastid	52.17	46.75
Bra040469.1-P	Field mustard	plastid	58.7	46.55
Zm00001d012293_P001	Maize	plastid	46.38	43.24
Zm00001d038291_P001	Maize	plastid	44.93	40.26
Zm00001d010136_P001	Maize	plastid	44.2	39.61
Zm00001d033469_P001	Maize	plastid	29.71	27.33
Zm00001d013534_P002	Maize	plastid	26.09	18.75

Protein Annotations

MapMan:1.1.5.1	EntrezGene:103628935	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30
ProteinID:AQK78059.1	UniProt:B1P758	EMBL:BT063150	InterPro:Beta-grasp_dom_sf	EMBL:EU328184	InterPro:Fd_pln
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055
GO:GO:0009416	GO:GO:0009507	GO:GO:0009536	GO:GO:0009628	GO:GO:0009987	GO:GO:0015979
GO:GO:0022900	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537	GO:GO:0055114	InterPro:IPR001041
InterPro:IPR012675	PFAM:PF00111	ScanProsite:PS00197	PFscan:PS51085	PANTHER:PTHR43112	PANTHER:PTHR43112:SF2
SUPFAM:SSF54292	TIGRFAMs:TIGR02008	UniParc:UPI000171E2FA	EnsemblPlantsGene:Zm00001d035002	EnsemblPlants:Zm00001d035002_P001	EnsemblPlants:Zm00001d035002_T001
SEG:seg	:	:	:	:	:

Description

ferredoxin5 ferredoxin5

Coordinates

chr6:-:1395899..1396315

Molecular Weight (calculated)

14552.9 Da

IEP (calculated)

4.054

GRAVY (calculated)

-0.045

Length

138 amino acids

Sequence
(BLAST)

001: MATVLSSPRA PAFSFSLRAA PAPTTVAMTR GGGASSRLRA QATYNVKLIT PEGEVELQVP DDVYILDYAE EEGIDLPYSC RAGSCSSCAG KVVSGSVDQS
101: DQSYLDDGQI AAGWVLTCVA YPTSDVVIET HKEDDLIS

Best Arabidopsis Sequence Match ( AT1G60950.1 )
(BLAST)

001: MASTALSSAI VGTSFIRRSP APISLRSLPS ANTQSLFGLK SGTARGGRVT AMATYKVKFI TPEGELEVEC DDDVYVLDAA EEAGIDLPYS CRAGSCSSCA
101: GKVVSGSVDQ SDQSFLDDEQ IGEGFVLTCA AYPTSDVTIE THKEEDIV

Arabidopsis Description

FD2Ferredoxin [Source:UniProtKB/TrEMBL;Acc:A0A178W2W5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.