CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 6
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88112
EES07255
KXG34948
KXG37086
OQU78269

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10960.1	EER88112	AT3G47620.1	21798944
AT1G10960.1	EES07255	AT3G47620.1	21798944
AT1G10960.1	OQU78269	AT5G42980.1	15352244
AT1G60950.1	KXG34948	AT4G22890.1	18243102
AT1G60950.1	KXG37086	AT4G22890.1	18243102
AT1G60950.1	OQU78269	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG24178	Sorghum	plastid	86.71	82.12
EES13198	Sorghum	plastid	78.32	77.78
Zm00001d035002_P001	Maize	plastid	74.83	77.54
TraesCS7D01G322100.1	Wheat	plastid	75.52	76.6
TraesCS7B01G226200.1	Wheat	plastid	75.52	76.06
TraesCS7A01G325500.1	Wheat	plastid	75.52	76.06
HORVU7Hr1G077750.1	Barley	plastid	74.83	75.89
Os08t0104600-02	Rice	extracellular	72.03	74.1
GSMUA_Achr8P32490_001	Banana	cytosol	35.66	73.91
Zm00001d035001_P001	Maize	plastid	76.92	73.33
TraesCS7B01G226100.1	Wheat	plastid	72.73	72.73
TraesCS7A01G325400.1	Wheat	plastid	72.73	72.73
HORVU7Hr1G077740.1	Barley	plastid	72.03	72.03
TraesCS7D01G322000.1	Wheat	plastid	72.03	72.03
KRH44081	Soybean	cytosol	48.95	69.31
VIT_12s0035g00270.t01	Wine grape	plastid	58.04	58.45
CDY12877	Canola	plastid	60.14	58.11
CDY44833	Canola	plastid	60.14	58.11
Bra027109.1-P	Field mustard	plastid	60.14	58.11
PGSC0003DMT400011522	Potato	plastid	55.24	58.09
Solyc01g103920.2.1	Tomato	plastid	56.64	57.86
KRH26360	Soybean	nucleus, plastid	59.44	57.82
CDY46194	Canola	plastid	59.44	57.43
Bra031471.1-P	Field mustard	plastid	59.44	57.43
CDY03773	Canola	plastid	59.44	57.43
KRH26361	Soybean	nucleus	58.74	57.14
CDY54581	Canola	plastid	58.74	56.76
CDY54579	Canola	plastid	58.74	56.76
Solyc10g044520.1.1	Tomato	plastid	56.64	56.25
PGSC0003DMT400087715	Potato	cytosol, plastid	40.56	55.77
KRH43040	Soybean	nucleus, plastid	55.94	55.56
AT1G60950.1	Thale cress	plastid	56.64	54.73
KRH59154	Soybean	nucleus, plastid	55.94	54.42
CDY20591	Canola	plastid	55.24	53.38
CDY20975	Canola	plastid	55.24	53.38
AT1G10960.1	Thale cress	plastid	55.24	53.38
Bra018415.1-P	Field mustard	plastid	55.24	53.38
Solyc10g075160.1.1	Tomato	plastid	53.15	52.78
CDY19334	Canola	plastid	51.05	52.52
CDY33318	Canola	plastid	53.85	52.03
PGSC0003DMT400031198	Potato	cytosol, extracellular, plastid	51.75	51.39
CDX97925	Canola	plastid	53.15	51.35
KRH26359	Soybean	mitochondrion, plastid	60.84	50.0
EER93144	Sorghum	plastid	50.35	47.68
EES10739	Sorghum	plastid	51.75	47.44
Bra040469.1-P	Field mustard	plastid	54.55	44.83
EES01793	Sorghum	plastid	47.55	41.21
EES19611	Sorghum	plastid	44.06	38.89
EER93719	Sorghum	plastid	30.77	29.53
EER93655	Sorghum	plastid	25.17	19.25

Protein Annotations

MapMan:1.1.5.1	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30	EntrezGene:8064335
InterPro:Beta-grasp_dom_sf	UniProt:C5YLG3	EnsemblPlants:EES13199	ProteinID:EES13199	ProteinID:EES13199.1	InterPro:Fd_pln
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0022900	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537
GO:GO:0055114	InterPro:IPR001041	InterPro:IPR012675	PFAM:PF00111	ScanProsite:PS00197	PFscan:PS51085
PANTHER:PTHR43112	PANTHER:PTHR43112:SF4	EnsemblPlantsGene:SORBI_3007G004700	SUPFAM:SSF54292	TIGRFAMs:TIGR02008	UniParc:UPI0001A876C4
RefSeq:XP_002443704.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:434275..435618

Molecular Weight (calculated)

14837.5 Da

IEP (calculated)

4.064

GRAVY (calculated)

0.175

Length

143 amino acids

Sequence
(BLAST)

001: MATVLSSLRA PAAFSVLRVA PAPAPPATVA LPATVARGAR LRAQATYTVK LVTPEGEVEL KVPDDVYILD QAEEEGIELP YSCRAGSCSS CAGKVVAGTV
101: DQSDQSFLDD DQIASGWVLT CAAYPTSDVV IATHLEDELT AGS

Best Arabidopsis Sequence Match ( AT1G60950.1 )
(BLAST)

001: MASTALSSAI VGTSFIRRSP APISLRSLPS ANTQSLFGLK SGTARGGRVT AMATYKVKFI TPEGELEVEC DDDVYVLDAA EEAGIDLPYS CRAGSCSSCA
101: GKVVSGSVDQ SDQSFLDDEQ IGEGFVLTCA AYPTSDVTIE THKEEDIV

Arabidopsis Description

FD2Ferredoxin [Source:UniProtKB/TrEMBL;Acc:A0A178W2W5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.