CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013534_P002	Maize	plastid	94.65	92.19
TraesCS4D01G025700.1	Wheat	plastid	79.14	80.43
TraesCS4A01G286700.1	Wheat	plastid	79.14	80.43
TraesCS4B01G028100.1	Wheat	plastid	79.68	80.11
GSMUA_Achr5P18450_001	Banana	plastid	62.57	78.0
Os03t0685000-01	Rice	plastid	74.87	76.5
CDY71732	Canola	cytosol	46.52	70.73
KRH58205	Soybean	mitochondrion, plastid	64.17	67.04
Bra035490.1-P	Field mustard	plastid	63.1	65.92
KRH04332	Soybean	mitochondrion, plastid	63.1	65.92
Bra023277.1-P	Field mustard	plastid	62.57	65.36
CDX84071	Canola	plastid	62.57	65.36
CDX93825	Canola	plastid	62.57	65.36
CDY66059	Canola	plastid	62.57	65.36
VIT_02s0012g00980.t01	Wine grape	plastid	64.17	63.83
PGSC0003DMT400045201	Potato	plastid	63.64	62.3
Solyc08g077050.2.1	Tomato	plastid	63.64	62.3
AT1G32550.2	Thale cress	plastid	62.03	59.79
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, vacuole	67.38	57.01
EES13198	Sorghum	plastid	21.39	27.78
HORVU4Hr1G004210.8	Barley	cytosol	32.62	27.73
EES01793	Sorghum	plastid	24.06	27.27
EES19611	Sorghum	plastid	21.93	25.31
EES13199	Sorghum	plastid	19.25	25.17
EER93144	Sorghum	plastid	20.32	25.17
EER93719	Sorghum	plastid	19.25	24.16
KXG24178	Sorghum	plastid	19.25	23.84
EES10739	Sorghum	plastid	17.65	21.15

Protein Annotations

InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	Gene3D:3.10.20.30	MapMan:35.1	InterPro:Beta-grasp_dom_sf	UniProt:C5WPK4
EnsemblPlants:EER93655	ProteinID:EER93655	ProteinID:EER93655.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0022900
GO:GO:0051536	InterPro:IPR001041	InterPro:IPR012675	PFAM:PF00111	PFscan:PS51085	PANTHER:PTHR43112
PANTHER:PTHR43112:SF10	EnsemblPlantsGene:SORBI_3001G134700	SUPFAM:SSF54292	UniParc:UPI0003C7352D	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:10636495..10639819

Molecular Weight (calculated)

20611.4 Da

IEP (calculated)

6.017

GRAVY (calculated)

-0.326

Length

187 amino acids

Sequence
(BLAST)

001: MACPAATTAR IGARRGPCLW RSERSISVLV GSASLLPDRA ARDTRARASE LQQAPRPASA TVPTHKVTVH DRQRGVVHEF VVPEDQYILH TAEAQDIRLP
101: FACRHGCCTS CAVRIKSGQI RQPEALGISA ELKDQGYALL CVGFPSGDVE VETQDEDEVY WLQFGRYFAR GPVERDDYAL ELAMGDE

Best Arabidopsis Sequence Match ( AT1G32550.1 )
(BLAST)

001: MALILPCTFC TSLQKKNFPI NRRYITNFRR GATTATCEFR IPVEVSTPSD RGSLVVPSHK VTVHDRQRGV VHEFEVPEDQ YILHSAESQN ISLPFACRHG
101: CCTSCAVRVK SGELRQPQAL GISAELKSQG YALLCVGFPT SDLEVETQDE DEVYWLQFGR YFARGPIERD DYALELAMGD E

Arabidopsis Description

FdC12Fe-2S ferredoxin-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IE99]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.