CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034760_P001	Maize	mitochondrion, plastid	96.03	95.39
Os03t0835900-01	Rice	plastid	86.09	84.97
GSMUA_Achr11P...	Banana	cytosol	54.3	81.19
TraesCS1B01G416500.1	Wheat	cytosol	47.68	74.23
Solyc11g068430.1.1	Tomato	nucleus	59.6	72.58
TraesCS5D01G516100.1	Wheat	plastid	71.52	70.59
TraesCS5B01G516000.1	Wheat	plastid	71.52	70.13
PGSC0003DMT400015058	Potato	plastid	66.89	66.89
KRH25235	Soybean	plastid	64.24	64.24
PGSC0003DMT400067774	Potato	plastid	62.25	62.67
KRH30423	Soybean	plastid	60.93	59.35
TraesCS5B01G517300.1	Wheat	plastid	55.63	55.63
VIT_13s0147g00110.t01	Wine grape	plastid	61.59	55.36
VIT_06s0080g00410.t01	Wine grape	plastid	63.58	53.33
EES10739	Sorghum	plastid	54.97	53.21
EES19611	Sorghum	plastid	56.95	53.09
TraesCS4A01G355200.1	Wheat	plastid	54.97	51.23
TraesCS4A01G356200.1	Wheat	mitochondrion, plastid	70.86	50.95
EES13199	Sorghum	plastid	47.68	50.35
EES13198	Sorghum	plastid	47.68	50.0
HORVU5Hr1G117910.3	Barley	plastid	70.86	45.92
KXG24178	Sorghum	plastid	45.7	45.7
EES01793	Sorghum	plastid	49.01	44.85
EER93719	Sorghum	plastid	28.48	28.86
EER93655	Sorghum	plastid	25.17	20.32

Protein Annotations

MapMan:1.1.5.1	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30	EntrezGene:8079664
InterPro:Beta-grasp_dom_sf	UniProt:C5WTY4	EnsemblPlants:EER93144	ProteinID:EER93144	ProteinID:EER93144.1	InterPro:Fd_pln
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0022900	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537
GO:GO:0055114	InterPro:IPR001041	InterPro:IPR012675	PFAM:PF00111	ScanProsite:PS00197	PFscan:PS51085
PANTHER:PTHR43112	PANTHER:PTHR43112:SF4	EnsemblPlantsGene:SORBI_3001G022900	SUPFAM:SSF54292	unigene:Sbi.1398	TIGRFAMs:TIGR02008
UniParc:UPI0001A828F9	RefSeq:XP_002466146.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:1839741..1842448

Molecular Weight (calculated)

16118.8 Da

IEP (calculated)

4.604

GRAVY (calculated)

-0.219

Length

151 amino acids

Sequence
(BLAST)

001: MSTSTFATSC TLLGNVRTQA SQTAVKSPSS LSFFSHVMKV PSLKTSKKLD VSAMAVYKVK LVTPEGQEHE FDAPDDTYIL DAAETAGVEL PYSCRAGACS
101: TCAGKIESGA VDQSDGSFLD DGQQEEGYVL TCVSYPKSDC VIHTHKEGDL Y

Best Arabidopsis Sequence Match ( AT2G27510.1 )
(BLAST)

001: MATVRISSTS MTKAVLRSQT TNKLITNKSY NLSVGSTKRV SRSFGLKCSA NSGGATMSAV YKVKLLGPDG QEDEFEVQDD QYILDAAEEA GVDLPYSCRA
101: GACSTCAGQI VSGNVDQSDG SFLEDSHLEK GYVLTCVAYP QSDCVIHTHK ETELF

Arabidopsis Description

FD3Ferredoxin [Source:UniProtKB/TrEMBL;Acc:A0A178VWS0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.