Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G517300.1 | Wheat | plastid | 88.89 | 95.36 |
| GSMUA_Achr11P... | Banana | cytosol | 37.65 | 60.4 |
| EER93144 | Sorghum | plastid | 51.23 | 54.97 |
| Solyc11g068430.1.1 | Tomato | nucleus | 41.98 | 54.84 |
| Zm00001d034760_P001 | Maize | mitochondrion, plastid | 51.23 | 54.61 |
| Os03t0835900-01 | Rice | plastid | 50.0 | 52.94 |
| PGSC0003DMT400067774 | Potato | plastid | 43.83 | 47.33 |
| PGSC0003DMT400015058 | Potato | plastid | 43.83 | 47.02 |
| KRH25235 | Soybean | plastid | 42.59 | 45.7 |
| KRH30423 | Soybean | plastid | 41.98 | 43.87 |
| TraesCS3A01G373900.1 | Wheat | mitochondrion | 37.04 | 42.25 |
| TraesCS1A01G276300.1 | Wheat | plastid | 38.89 | 41.72 |
| VIT_13s0147g00110.t01 | Wine grape | plastid | 43.21 | 41.67 |
| TraesCS7A01G325400.1 | Wheat | plastid | 35.8 | 40.56 |
| TraesCS7A01G325500.1 | Wheat | plastid | 34.57 | 39.44 |
| VIT_06s0080g00410.t01 | Wine grape | plastid | 43.21 | 38.89 |
| TraesCS4A01G356200.1 | Wheat | mitochondrion, plastid | 46.91 | 36.19 |
| TraesCS4A01G297900.1 | Wheat | plastid | 24.69 | 27.4 |
| TraesCS4A01G286700.1 | Wheat | plastid | 24.07 | 21.2 |
Protein Annotations
| MapMan:1.1.5.1 | InterPro:2Fe-2S_ferredoxin-like_sf | InterPro:2Fe-2S_ferredoxin-type | Gene3D:3.10.20.30 | InterPro:Beta-grasp_dom_sf | InterPro:Fd_pln |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0006091 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009055 | GO:GO:0009987 | GO:GO:0022900 | GO:GO:0051536 | GO:GO:0051537 | InterPro:IPR001041 |
| InterPro:IPR012675 | PFAM:PF00111 | PFscan:PS51085 | PANTHER:PTHR43112 | PANTHER:PTHR43112:SF4 | SUPFAM:SSF54292 |
| TIGRFAMs:TIGR02008 | EnsemblPlantsGene:TraesCS4A01G355200 | EnsemblPlants:TraesCS4A01G355200.1 | TIGR:cd00207 | SEG:seg | : |
Description
No Description!
Coordinates
chr4A:+:629391843..629392483
Molecular Weight (calculated)
17304.6 Da
IEP (calculated)
8.214
GRAVY (calculated)
-0.157
Length
162 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTSTFATSA RALQHIISTA GASRRAATSP RRPSSLRFAG RGGAPLQVPS LLIRSSRCKP DVSAAVVYRV KLVTPGGREY ELEAPDDAYI LDTAESAGME
101: LPCACRAGAC YKCAGKVEAG TVHRADGSLL HGRLQEEGYV LICVSCPRSD CVIHTHKEDD LW
101: LPCACRAGAC YKCAGKVEAG TVHRADGSLL HGRLQEEGYV LICVSCPRSD CVIHTHKEDD LW
001: MATVRISSTS MTKAVLRSQT TNKLITNKSY NLSVGSTKRV SRSFGLKCSA NSGGATMSAV YKVKLLGPDG QEDEFEVQDD QYILDAAEEA GVDLPYSCRA
101: GACSTCAGQI VSGNVDQSDG SFLEDSHLEK GYVLTCVAYP QSDCVIHTHK ETELF
101: GACSTCAGQI VSGNVDQSDG SFLEDSHLEK GYVLTCVAYP QSDCVIHTHK ETELF
Arabidopsis Description
FD3Ferredoxin [Source:UniProtKB/TrEMBL;Acc:A0A178VWS0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.