Factsheet for Zm00001d034760_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93144	Sorghum	plastid	95.39	96.03
Os03t0835900-01	Rice	plastid	84.21	83.66
GSMUA_Achr11P...	Banana	cytosol	53.29	80.2
TraesCS1B01G416500.1	Wheat	cytosol	46.05	72.16
Solyc11g068430.1.1	Tomato	nucleus	58.55	71.77
TraesCS5D01G516100.1	Wheat	plastid	71.05	70.59
TraesCS5B01G516000.1	Wheat	plastid	70.39	69.48
PGSC0003DMT400015058	Potato	plastid	66.45	66.89
KRH25235	Soybean	plastid	64.47	64.9
PGSC0003DMT400067774	Potato	plastid	61.18	62.0
KRH30423	Soybean	plastid	61.18	60.0
Zm00001d038291_P001	Maize	plastid	58.55	57.79
VIT_13s0147g00110.t01	Wine grape	plastid	63.16	57.14
TraesCS5B01G517300.1	Wheat	plastid	55.26	55.63
VIT_06s0080g00410.t01	Wine grape	plastid	65.79	55.56
Zm00001d010136_P001	Maize	plastid	53.95	53.25
Zm00001d035002_P001	Maize	plastid	47.37	52.17
TraesCS4A01G355200.1	Wheat	plastid	54.61	51.23
Zm00001d012293_P001	Maize	plastid	49.34	50.68
Zm00001d025352_P001	Maize	plastid	51.32	50.65
Zm00001d003797_P001	Maize	plastid	51.32	50.32
TraesCS4A01G356200.1	Wheat	mitochondrion, plastid	68.42	49.52
Zm00001d035001_P001	Maize	plastid	48.03	48.67
Zm00001d035003_P001	Maize	plastid	44.74	48.57
HORVU5Hr1G117910.3	Barley	plastid	71.05	46.35
Zm00001d049732_P001	Maize	plastid	44.08	43.23
Zm00001d033469_P001	Maize	plastid	28.29	28.67
Zm00001d013534_P002	Maize	plastid	24.34	19.27

Protein Annotations

MapMan:1.1.5.1	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30	PDB:5H57
PDB:5H5J	UniProt:B6STH7	ProteinID:BAA19251.1	InterPro:Beta-grasp_dom_sf	EMBL:EU956042	EMBL:EU956740
InterPro:Fd_pln	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009055	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009578	GO:GO:0009987
GO:GO:0022900	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537	GO:GO:0055114	InterPro:IPR001041
InterPro:IPR012675	EMBL:M73831	ProteinID:ONM11189.1	UniProt:P27788	PFAM:PF00111	ScanProsite:PS00197
PFscan:PS51085	PANTHER:PTHR43112	PANTHER:PTHR43112:SF4	SUPFAM:SSF54292	TIGRFAMs:TIGR02008	UniParc:UPI000012A688
EnsemblPlantsGene:Zm00001d034760	EnsemblPlants:Zm00001d034760_P001	EnsemblPlants:Zm00001d034760_T001	:	:	:

Description

ferredoxin3Ferredoxin-3%2C chloroplastic

Coordinates

chr1:+:301511660..301512118

Molecular Weight (calculated)

16123.7 Da

IEP (calculated)

4.409

GRAVY (calculated)

-0.239

Length

152 amino acids

Sequence
(BLAST)

001: MSTSTFATSC TLLGNVRTTQ ASQTAVKSPS SLSFFSQVTK VPSLKTSKKL DVSAMAVYKV KLVGPEGEEH EFDAPDDAYI LDAAETAGVE LPYSCRAGAC
101: STCAGKIESG SVDQSDGSFL DDGQQEEGYV LTCVSYPKSD CVIHTHKEGD LY

Best Arabidopsis Sequence Match ( AT2G27510.1 )
(BLAST)

001: MATVRISSTS MTKAVLRSQT TNKLITNKSY NLSVGSTKRV SRSFGLKCSA NSGGATMSAV YKVKLLGPDG QEDEFEVQDD QYILDAAEEA GVDLPYSCRA
101: GACSTCAGQI VSGNVDQSDG SFLEDSHLEK GYVLTCVAYP QSDCVIHTHK ETELF

Arabidopsis Description

FD3Ferredoxin [Source:UniProtKB/TrEMBL;Acc:A0A178VWS0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.