Factsheet for VIT_13s0147g00110.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P00940_001	Banana	cytosol	46.43	79.59
GSMUA_Achr11P...	Banana	cytosol	44.64	74.26
Solyc11g068430.1.1	Tomato	nucleus	54.17	73.39
KRG90740	Soybean	plastid	67.26	73.38
KRH36019	Soybean	plastid	66.07	72.08
PGSC0003DMT400015058	Potato	plastid	63.69	70.86
PGSC0003DMT400067774	Potato	plastid	60.71	68.0
VIT_06s0080g00410.t01	Wine grape	plastid	71.43	66.67
Os07t0251500-00	Rice	cytosol	39.29	66.0
Zm00001d034760_P001	Maize	mitochondrion, plastid	57.14	63.16
EER93144	Sorghum	plastid	55.36	61.59
Os03t0835900-01	Rice	plastid	55.95	61.44
TraesCS1B01G416500.1	Wheat	cytosol	34.52	59.79
TraesCS5D01G516100.1	Wheat	plastid	54.17	59.48
TraesCS5B01G516000.1	Wheat	plastid	52.98	57.79
VIT_12s0035g00270.t01	Wine grape	plastid	45.24	53.52
TraesCS5B01G517300.1	Wheat	plastid	42.26	47.02
TraesCS4A01G355200.1	Wheat	plastid	41.67	43.21
TraesCS4A01G356200.1	Wheat	mitochondrion, plastid	53.57	42.86
HORVU5Hr1G117910.3	Barley	plastid	55.36	39.91
GSMUA_Achr11P...	Banana	plastid	61.31	39.02
VIT_05s0020g03490.t01	Wine grape	plastid	25.6	29.25
VIT_02s0012g00980.t01	Wine grape	plastid	23.81	21.28

Protein Annotations

MapMan:1.1.5.1	EntrezGene:100266537	wikigene:100266537	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS
Gene3D:3.10.20.30	EMBL:AM479779	InterPro:Beta-grasp_dom_sf	ProteinID:CAN81747	ProteinID:CAN81747.1	ProteinID:CBI18580
ProteinID:CBI18580.3	UniProt:D7SSE8	EMBL:FN594976	InterPro:Fd_pln	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0022900	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537	GO:GO:0055114	InterPro:IPR001041
InterPro:IPR012675	EntrezGene:LOC100266537	wikigene:LOC100266537	PFAM:PF00111	ScanProsite:PS00197	PFscan:PS51085
PANTHER:PTHR43112	PANTHER:PTHR43112:SF12	SUPFAM:SSF54292	TIGR:TC57224	TIGRFAMs:TIGR02008	UniParc:UPI0001BE13B6
ArrayExpress:VIT_13s0147g00110	EnsemblPlantsGene:VIT_13s0147g00110	EnsemblPlants:VIT_13s0147g00110.t01	unigene:Vvi.12845	RefSeq:XP_002267623	RefSeq:XP_002267623.2

Description

Ferredoxin [Source:UniProtKB/TrEMBL;Acc:D7SSE8]

Coordinates

chr13:-:11123757..11127942

Molecular Weight (calculated)

17937.1 Da

IEP (calculated)

4.910

GRAVY (calculated)

-0.102

Length

168 amino acids

Sequence
(BLAST)

001: MWTYVTSDVS VSSRAKSVNM STVSLPTPFL FKSAPLKKSC ALIRSPGSLG SVRSTSKAFG LKSSSFRVSA MAVYKVKLIG PDGEESEFDA PDDVYILDSA
101: ENAGLELPYS CRAGACSTCA GQMVLGSVDQ SDGSFLDEKQ MDNGYVLTCV SYPTSDSVIH THKEGDLY

Best Arabidopsis Sequence Match ( AT2G27510.1 )
(BLAST)

001: MATVRISSTS MTKAVLRSQT TNKLITNKSY NLSVGSTKRV SRSFGLKCSA NSGGATMSAV YKVKLLGPDG QEDEFEVQDD QYILDAAEEA GVDLPYSCRA
101: GACSTCAGQI VSGNVDQSDG SFLEDSHLEK GYVLTCVAYP QSDCVIHTHK ETELF

Arabidopsis Description

FD3Ferredoxin [Source:UniProtKB/TrEMBL;Acc:A0A178VWS0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.