Factsheet for PGSC0003DMT400067774

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g068430.1.1	Tomato	nucleus	80.0	96.77
PGSC0003DMT400015058	Potato	plastid	79.33	78.81
GSMUA_Achr5P00940_001	Banana	cytosol	50.67	77.55
GSMUA_Achr11P...	Banana	cytosol	48.67	72.28
Os07t0251500-00	Rice	cytosol	44.67	67.0
KRH30423	Soybean	plastid	68.0	65.81
KRH25235	Soybean	plastid	66.0	65.56
PGSC0003DMT400060121	Potato	plastid	62.67	62.67
EER93144	Sorghum	plastid	62.67	62.25
TraesCS1B01G416500.1	Wheat	cytosol	40.0	61.86
Os03t0835900-01	Rice	plastid	62.67	61.44
Zm00001d034760_P001	Maize	mitochondrion, plastid	62.0	61.18
VIT_13s0147g00110.t01	Wine grape	plastid	68.0	60.71
PGSC0003DMT400061612	Potato	plastid	60.0	60.0
TraesCS5D01G516100.1	Wheat	plastid	58.67	57.52
TraesCS5B01G516000.1	Wheat	plastid	58.67	57.14
VIT_06s0080g00410.t01	Wine grape	plastid	68.0	56.67
PGSC0003DMT400031198	Potato	cytosol, extracellular, plastid	50.67	52.78
PGSC0003DMT400087715	Potato	cytosol, plastid	36.0	51.92
PGSC0003DMT400011522	Potato	plastid	45.33	50.0
TraesCS5B01G517300.1	Wheat	plastid	46.67	46.36
TraesCS4A01G355200.1	Wheat	plastid	47.33	43.83
TraesCS4A01G356200.1	Wheat	mitochondrion, plastid	60.67	43.33
HORVU5Hr1G117910.3	Barley	plastid	59.33	38.2
GSMUA_Achr11P...	Banana	plastid	60.67	34.47
PGSC0003DMT400086140	Potato	plastid	29.33	29.33
PGSC0003DMT400045201	Potato	plastid	29.33	23.04

Protein Annotations

MapMan:1.1.5.1	EntrezGene:102605264	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30
InterPro:Beta-grasp_dom_sf	InterPro:Fd_pln	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009055	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0022900	GO:GO:0046872
GO:GO:0051536	GO:GO:0051537	GO:GO:0055114	InterPro:IPR001041	InterPro:IPR012675	UniProt:M1CHV6
PFAM:PF00111	EnsemblPlantsGene:PGSC0003DMG400026360	PGSC:PGSC0003DMG400026360	EnsemblPlants:PGSC0003DMT400067774	ScanProsite:PS00197	PFscan:PS51085
PANTHER:PTHR43112	PANTHER:PTHR43112:SF12	SUPFAM:SSF54292	TIGRFAMs:TIGR02008	UniParc:UPI00029575A0	RefSeq:XP_006362894.1
RefSeq:XP_006362895.1	RefSeq:XP_006362896.1	:	:	:	:

Description

Ferredoxin-3, chloroplast [Source:PGSC_GENE;Acc:PGSC0003DMG400026360]

Coordinates

chr11:+:40380014..40381382

Molecular Weight (calculated)

16302.2 Da

IEP (calculated)

5.197

GRAVY (calculated)

-0.218

Length

150 amino acids

Sequence
(BLAST)

001: MSTVRLPSTC MFKAAPLSER KSAFVKMPFS VGSVRNISKS FGLKADSNFR VSANVYKVKL VCPDGTEHEF EAPSDTYILD AAENAGIDLP YSCRAGACST
101: CAGKIESGTV DQSDGSFLDD NQMKEGYLLT CVSYPNSDCV IHTHKECDLY

Best Arabidopsis Sequence Match ( AT2G27510.1 )
(BLAST)

001: MATVRISSTS MTKAVLRSQT TNKLITNKSY NLSVGSTKRV SRSFGLKCSA NSGGATMSAV YKVKLLGPDG QEDEFEVQDD QYILDAAEEA GVDLPYSCRA
101: GACSTCAGQI VSGNVDQSDG SFLEDSHLEK GYVLTCVAYP QSDCVIHTHK ETELF

Arabidopsis Description

FD3Ferredoxin [Source:UniProtKB/TrEMBL;Acc:A0A178VWS0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.