Factsheet for Solyc11g068430.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	plastid

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400067774	Potato	plastid	96.77	80.0
GSMUA_Achr5P00940_001	Banana	cytosol	62.1	78.57
GSMUA_Achr11P...	Banana	cytosol	59.68	73.27
Solyc05g055280.1.1	Tomato	cytosol	54.03	68.37
Os07t0251500-00	Rice	cytosol	54.03	67.0
TraesCS1B01G416500.1	Wheat	cytosol	50.0	63.92
KRH25235	Soybean	plastid	77.42	63.58
KRH30423	Soybean	plastid	78.23	62.58
EER93144	Sorghum	plastid	72.58	59.6
Zm00001d034760_P001	Maize	mitochondrion, plastid	71.77	58.55
Os03t0835900-01	Rice	plastid	71.77	58.17
Solyc11g006910.1.1	Tomato	mitochondrion, plastid	58.06	57.6
TraesCS5D01G516100.1	Wheat	plastid	68.55	55.56
TraesCS5B01G516000.1	Wheat	plastid	67.74	54.55
VIT_13s0147g00110.t01	Wine grape	plastid	73.39	54.17
VIT_06s0080g00410.t01	Wine grape	plastid	72.58	50.0
Solyc10g075160.1.1	Tomato	plastid	57.26	49.31
Solyc01g103920.2.1	Tomato	plastid	52.42	46.43
Solyc10g044520.1.1	Tomato	plastid	53.23	45.83
TraesCS5B01G517300.1	Wheat	plastid	54.84	45.03
Solyc04g009710.1.1	Tomato	plastid	55.65	44.81
TraesCS4A01G355200.1	Wheat	plastid	54.84	41.98
TraesCS4A01G356200.1	Wheat	mitochondrion, plastid	70.16	41.43
HORVU5Hr1G117910.3	Barley	plastid	68.55	36.48
GSMUA_Achr11P...	Banana	plastid	66.94	31.44
Solyc08g077050.2.1	Tomato	plastid	31.45	20.42
Solyc03g005190.2.1	Tomato	nucleus	33.06	13.99

Protein Annotations

MapMan:1.1.5.1	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30	InterPro:Beta-grasp_dom_sf
InterPro:Fd_pln	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0022900	GO:GO:0046872	GO:GO:0051536
GO:GO:0051537	GO:GO:0055114	InterPro:IPR001041	InterPro:IPR012675	UniProt:K4DA01	PFAM:PF00111
ScanProsite:PS00197	PFscan:PS51085	PANTHER:PTHR43112	PANTHER:PTHR43112:SF4	SUPFAM:SSF54292	EnsemblPlantsGene:Solyc11g068430.1
EnsemblPlants:Solyc11g068430.1.1	TIGRFAMs:TIGR02008	UniParc:UPI000276A485	:	:	:

Description

Ferredoxin [Source:UniProtKB/TrEMBL;Acc:K4DA01]

Coordinates

chr11:+:53154630..53155004

Molecular Weight (calculated)

13328.4 Da

IEP (calculated)

4.411

GRAVY (calculated)

-0.257

Length

124 amino acids

Sequence
(BLAST)

001: MPFSVGSVRN ISKSFGLKAD SSFRVSANVY KVKLVCPDGT EHEFEAPSDT YILDAAENAG VDLPYSCRAG ACSTCAGKIE SGTVDQSDGS FLDDNQIKEG
101: YLLTCVSYPN SDCVIHTHKE GDLY

Best Arabidopsis Sequence Match ( AT2G27510.1 )
(BLAST)

001: MATVRISSTS MTKAVLRSQT TNKLITNKSY NLSVGSTKRV SRSFGLKCSA NSGGATMSAV YKVKLLGPDG QEDEFEVQDD QYILDAAEEA GVDLPYSCRA
101: GACSTCAGQI VSGNVDQSDG SFLEDSHLEK GYVLTCVAYP QSDCVIHTHK ETELF

Arabidopsis Description

FD3Ferredoxin [Source:UniProtKB/TrEMBL;Acc:A0A178VWS0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.