Factsheet for Solyc01g103920.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 8
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g116320.2.1
Solyc08g007770.2.1
Solyc08g080050.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10960.1	Solyc03g116320.2.1	AT3G47620.1	21798944
AT1G60950.1	Solyc08g007770.2.1	AT4G22890.1	18243102
AT1G60950.1	Solyc08g080050.2.1	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400011522	Potato	plastid	92.14	94.85
Solyc10g044520.1.1	Tomato	plastid	76.43	74.31
Solyc10g075160.1.1	Tomato	plastid	68.57	66.67
VIT_12s0035g00270.t01	Wine grape	plastid	67.14	66.2
KRH59154	Soybean	nucleus, plastid	69.29	65.99
KRH43040	Soybean	nucleus, plastid	67.86	65.97
Solyc05g055280.1.1	Tomato	cytosol	44.29	63.27
GSMUA_Achr5P01200_001	Banana	plastid	61.43	60.14
AT1G60950.1	Thale cress	plastid	63.57	60.14
AT1G10960.1	Thale cress	plastid	63.57	60.14
CDY20591	Canola	plastid	62.14	58.78
CDY20975	Canola	plastid	61.43	58.11
CDY44833	Canola	plastid	61.43	58.11
CDY03773	Canola	plastid	61.43	58.11
Bra031471.1-P	Field mustard	plastid	60.71	57.43
Bra027109.1-P	Field mustard	plastid	60.71	57.43
Bra018415.1-P	Field mustard	plastid	60.71	57.43
CDY12877	Canola	plastid	60.71	57.43
CDY54581	Canola	plastid	60.71	57.43
CDY54579	Canola	plastid	60.71	57.43
CDY46194	Canola	plastid	60.71	57.43
Zm00001d035002_P001	Maize	plastid	56.43	57.25
EES13199	Sorghum	plastid	57.86	56.64
TraesCS7D01G322100.1	Wheat	plastid	56.43	56.03
HORVU7Hr1G077750.1	Barley	plastid	56.43	56.03
TraesCS7A01G325400.1	Wheat	plastid	57.14	55.94
TraesCS7B01G226100.1	Wheat	plastid	57.14	55.94
TraesCS7D01G322000.1	Wheat	plastid	57.14	55.94
HORVU7Hr1G077740.1	Barley	plastid	57.14	55.94
TraesCS7A01G325500.1	Wheat	plastid	56.43	55.63
TraesCS7B01G226200.1	Wheat	plastid	56.43	55.63
Os08t0104600-02	Rice	extracellular	55.0	55.4
EES13198	Sorghum	plastid	56.43	54.86
CDY19334	Canola	plastid	54.29	54.68
CDX97925	Canola	plastid	57.14	54.05
CDY33318	Canola	plastid	57.14	54.05
KXG24178	Sorghum	plastid	57.14	52.98
Zm00001d035003_P001	Maize	plastid	52.86	52.86
Solyc11g006910.1.1	Tomato	mitochondrion, plastid	47.14	52.8
Zm00001d035001_P001	Maize	plastid	56.43	52.67
Solyc11g068430.1.1	Tomato	nucleus	46.43	52.42
Bra040469.1-P	Field mustard	plastid	57.86	46.55
Zm00001d049732_P001	Maize	plastid	51.43	46.45
Solyc04g009710.1.1	Tomato	plastid	45.71	41.56
Solyc08g077050.2.1	Tomato	plastid	32.14	23.56
Solyc03g005190.2.1	Tomato	nucleus	31.43	15.02

Protein Annotations

MapMan:1.1.5.1	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30	InterPro:Beta-grasp_dom_sf
InterPro:Fd_pln	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0022900	GO:GO:0046872	GO:GO:0051536
GO:GO:0051537	GO:GO:0055114	InterPro:IPR001041	InterPro:IPR012675	UniProt:K4B1W7	PFAM:PF00111
ScanProsite:PS00197	PFscan:PS51085	PANTHER:PTHR43112	PANTHER:PTHR43112:SF4	SUPFAM:SSF54292	EnsemblPlantsGene:Solyc01g103920.2
EnsemblPlants:Solyc01g103920.2.1	TIGRFAMs:TIGR02008	UniParc:UPI00027685F6	SEG:seg	:	:

Description

Ferredoxin [Source:UniProtKB/TrEMBL;Acc:K4B1W7]

Coordinates

chr1:-:92406386..92407140

Molecular Weight (calculated)

14949.6 Da

IEP (calculated)

4.259

GRAVY (calculated)

-0.049

Length

140 amino acids

Sequence
(BLAST)

001: MASISGTIIS TSFMPRKPVV TSFKAFPAIL GVKYANGGKI TCMATYKVKL ITPSGAVEFD CPDDVYILDQ AEEEGHEIPY SCRAGSCSSC AGKIVSGSVD
101: QSDGNFLDDE QISSGYVLTC VAYPQSDVTI ETHKEEELTS

Best Arabidopsis Sequence Match ( AT1G60950.1 )
(BLAST)

001: MASTALSSAI VGTSFIRRSP APISLRSLPS ANTQSLFGLK SGTARGGRVT AMATYKVKFI TPEGELEVEC DDDVYVLDAA EEAGIDLPYS CRAGSCSSCA
101: GKVVSGSVDQ SDQSFLDDEQ IGEGFVLTCA AYPTSDVTIE THKEEDIV

Arabidopsis Description

FD2Ferredoxin [Source:UniProtKB/TrEMBL;Acc:A0A178W2W5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.