Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 6
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G075560.1 | |
| HORVU5Hr1G124210.2 | |
| HORVU6Hr1G075650.1 | |
| HORVU7Hr1G038130.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G322000.1 | Wheat | plastid | 100.0 | 100.0 |
| TraesCS7A01G325400.1 | Wheat | plastid | 99.3 | 99.3 |
| TraesCS7B01G226100.1 | Wheat | plastid | 99.3 | 99.3 |
| GSMUA_Achr8P32490_001 | Banana | cytosol | 37.76 | 78.26 |
| HORVU7Hr1G077750.1 | Barley | plastid | 76.22 | 77.31 |
| EES13198 | Sorghum | plastid | 74.13 | 73.61 |
| Os08t0104600-02 | Rice | extracellular | 71.33 | 73.38 |
| EES13199 | Sorghum | plastid | 72.03 | 72.03 |
| Zm00001d035002_P001 | Maize | plastid | 68.53 | 71.01 |
| KXG24178 | Sorghum | plastid | 73.43 | 69.54 |
| KRH44081 | Soybean | cytosol | 48.95 | 69.31 |
| Zm00001d035001_P001 | Maize | plastid | 70.63 | 67.33 |
| Zm00001d035003_P001 | Maize | plastid | 62.24 | 63.57 |
| VIT_12s0035g00270.t01 | Wine grape | plastid | 62.24 | 62.68 |
| Solyc10g044520.1.1 | Tomato | plastid | 60.14 | 59.72 |
| CDY20975 | Canola | plastid | 60.14 | 58.11 |
| AT1G10960.1 | Thale cress | plastid | 60.14 | 58.11 |
| Bra018415.1-P | Field mustard | plastid | 59.44 | 57.43 |
| PGSC0003DMT400011522 | Potato | plastid | 54.55 | 57.35 |
| Solyc01g103920.2.1 | Tomato | plastid | 55.94 | 57.14 |
| KRH26361 | Soybean | nucleus | 58.74 | 57.14 |
| CDY46194 | Canola | plastid | 58.74 | 56.76 |
| CDY20591 | Canola | plastid | 58.74 | 56.76 |
| CDY12877 | Canola | plastid | 58.74 | 56.76 |
| Bra031471.1-P | Field mustard | plastid | 58.74 | 56.76 |
| Bra027109.1-P | Field mustard | plastid | 58.74 | 56.76 |
| KRH26360 | Soybean | nucleus, plastid | 58.04 | 56.46 |
| KRH43040 | Soybean | nucleus, plastid | 56.64 | 56.25 |
| AT1G60950.1 | Thale cress | plastid | 58.04 | 56.08 |
| CDY44833 | Canola | plastid | 58.04 | 56.08 |
| CDY03773 | Canola | plastid | 58.04 | 56.08 |
| CDY54581 | Canola | plastid | 57.34 | 55.41 |
| CDY54579 | Canola | plastid | 57.34 | 55.41 |
| PGSC0003DMT400087715 | Potato | cytosol, plastid | 39.86 | 54.81 |
| KRH59154 | Soybean | nucleus, plastid | 55.94 | 54.42 |
| Zm00001d049732_P001 | Maize | plastid | 58.74 | 54.19 |
| PGSC0003DMT400031198 | Potato | cytosol, extracellular, plastid | 54.55 | 54.17 |
| KRH26359 | Soybean | mitochondrion, plastid | 65.73 | 54.02 |
| Solyc10g075160.1.1 | Tomato | plastid | 53.15 | 52.78 |
| CDY33318 | Canola | plastid | 53.85 | 52.03 |
| CDX97925 | Canola | plastid | 53.85 | 52.03 |
| CDY19334 | Canola | plastid | 50.35 | 51.8 |
| HORVU3Hr1G084210.1 | Barley | plastid | 51.75 | 49.66 |
| HORVU2Hr1G072880.1 | Barley | plastid | 49.65 | 47.02 |
| Bra040469.1-P | Field mustard | plastid | 53.85 | 44.25 |
| HORVU5Hr1G117910.3 | Barley | plastid | 51.75 | 31.76 |
| HORVU4Hr1G002520.1 | Barley | plastid | 29.37 | 28.38 |
| HORVU4Hr1G004210.8 | Barley | cytosol | 24.48 | 15.91 |
Protein Annotations
| MapMan:1.1.5.1 | InterPro:2Fe-2S_ferredoxin-like_sf | InterPro:2Fe-2S_ferredoxin-type | InterPro:2Fe2S_fd_BS | Gene3D:3.10.20.30 | InterPro:Beta-grasp_dom_sf |
| InterPro:Fd_pln | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006091 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009055 |
| GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 | GO:GO:0022900 | GO:GO:0046872 | GO:GO:0051536 |
| GO:GO:0051537 | GO:GO:0055114 | EnsemblPlantsGene:HORVU7Hr1G077740 | EnsemblPlants:HORVU7Hr1G077740.1 | InterPro:IPR001041 | InterPro:IPR012675 |
| UniProt:M0XMF8 | PFAM:PF00111 | ScanProsite:PS00197 | PFscan:PS51085 | PANTHER:PTHR43112 | PANTHER:PTHR43112:SF7 |
| SUPFAM:SSF54292 | TIGRFAMs:TIGR02008 | UniParc:UPI00016EF560 | SEG:seg | : | : |
Description
Ferredoxin [Source:UniProtKB/TrEMBL;Acc:M0XMF8]
Coordinates
chrchr7H:+:456582608..456584103
Molecular Weight (calculated)
15273.0 Da
IEP (calculated)
4.302
GRAVY (calculated)
-0.080
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAALSLRAP FSVRAVAPPA PRVALAPAAL SLAAAKQVRG ARLRAQATYK VKLVTPEGEV ELEVPDDVYI LDQAEEEGID LPYSCRAGSC SSCAGKLVSG
101: EIDQSDQSFL DDDQMEAGWV LTCHAYPKSD IVIETHKEEE LTA
101: EIDQSDQSFL DDDQMEAGWV LTCHAYPKSD IVIETHKEEE LTA
001: MASTALSSAI VGTSFIRRSP APISLRSLPS ANTQSLFGLK SGTARGGRVT AMATYKVKFI TPEGELEVEC DDDVYVLDAA EEAGIDLPYS CRAGSCSSCA
101: GKVVSGSVDQ SDQSFLDDEQ IGEGFVLTCA AYPTSDVTIE THKEEDIV
101: GKVVSGSVDQ SDQSFLDDEQ IGEGFVLTCA AYPTSDVTIE THKEEDIV
Arabidopsis Description
FD2Ferredoxin [Source:UniProtKB/TrEMBL;Acc:A0A178W2W5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.