Factsheet for Zm00001d049732_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d018045_P001
Zm00001d019454_P001
Zm00001d034900_P001
Zm00001d034904_P001
Zm00001d037221_P001
Zm00001d038652_P003
Zm00001d044836_P001
Zm00001d052256_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10960.1	Zm00001d018045_P001	AT3G47620.1	21798944
AT1G10960.1	Zm00001d037221_P001	AT3G47620.1	21798944
AT1G10960.1	Zm00001d044836_P001	AT3G47620.1	21798944
AT1G10960.1	Zm00001d052256_P001	AT3G47620.1	21798944
AT1G10960.1	Zm00001d038652_P003	AT5G42980.1	15352244
AT1G60950.1	Zm00001d019454_P001	AT4G22890.1	18243102
AT1G60950.1	Zm00001d034900_P001	AT4G22890.1	18243102
AT1G60950.1	Zm00001d034904_P001	AT4G22890.1	18243102
AT1G60950.1	Zm00001d038652_P003	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P32490_001	Banana	cytosol	28.39	63.77
Zm00001d035003_P001	Maize	plastid	57.42	63.57
Zm00001d035002_P001	Maize	plastid	56.13	63.04
Os08t0104600-02	Rice	extracellular	54.84	61.15
TraesCS7B01G226200.1	Wheat	plastid	55.48	60.56
TraesCS7A01G325500.1	Wheat	plastid	55.48	60.56
TraesCS7D01G322100.1	Wheat	plastid	54.84	60.28
HORVU7Hr1G077750.1	Barley	plastid	54.19	59.57
CDY19334	Canola	plastid	52.9	58.99
TraesCS7D01G322000.1	Wheat	plastid	54.19	58.74
TraesCS7B01G226100.1	Wheat	plastid	54.19	58.74
TraesCS7A01G325400.1	Wheat	plastid	54.19	58.74
HORVU7Hr1G077740.1	Barley	plastid	54.19	58.74
KRH44081	Soybean	cytosol	38.06	58.42
CDX97925	Canola	plastid	54.19	56.76
Zm00001d035001_P001	Maize	plastid	54.19	56.0
CDY54579	Canola	plastid	52.26	54.73
CDY44833	Canola	plastid	52.26	54.73
CDY54581	Canola	plastid	52.26	54.73
CDY03773	Canola	plastid	52.26	54.73
Solyc10g075160.1.1	Tomato	plastid	49.68	53.47
CDY46194	Canola	plastid	50.97	53.38
AT1G60950.1	Thale cress	plastid	50.97	53.38
Bra018415.1-P	Field mustard	plastid	50.97	53.38
AT1G10960.1	Thale cress	plastid	50.97	53.38
CDY20591	Canola	plastid	50.97	53.38
Bra031471.1-P	Field mustard	plastid	50.97	53.38
KRH26360	Soybean	nucleus, plastid	50.32	53.06
Bra027109.1-P	Field mustard	plastid	50.32	52.7
CDY12877	Canola	plastid	50.32	52.7
VIT_12s0035g00270.t01	Wine grape	plastid	47.74	52.11
PGSC0003DMT400031198	Potato	cytosol, extracellular, plastid	48.39	52.08
CDY20975	Canola	plastid	49.68	52.03
KRH26361	Soybean	nucleus	49.03	51.7
PGSC0003DMT400011522	Potato	plastid	45.16	51.47
Solyc01g103920.2.1	Tomato	plastid	46.45	51.43
CDY33318	Canola	plastid	48.39	50.68
PGSC0003DMT400087715	Potato	cytosol, plastid	33.55	50.0
Solyc10g044520.1.1	Tomato	plastid	44.52	47.92
KRH43040	Soybean	nucleus, plastid	44.52	47.92
KRH59154	Soybean	nucleus, plastid	45.16	47.62
Zm00001d025352_P001	Maize	plastid	45.16	45.45
Zm00001d012293_P001	Maize	plastid	43.23	45.27
Zm00001d003797_P001	Maize	plastid	44.52	44.52
Zm00001d034760_P001	Maize	mitochondrion, plastid	43.23	44.08
KRH26359	Soybean	mitochondrion, plastid	48.39	43.1
Bra040469.1-P	Field mustard	plastid	48.39	43.1
Zm00001d038291_P001	Maize	plastid	40.65	40.91
Zm00001d010136_P001	Maize	plastid	39.35	39.61
Zm00001d033469_P001	Maize	plastid	25.81	26.67
Zm00001d013534_P002	Maize	plastid	20.65	16.67

Protein Annotations

MapMan:1.1.5.1	EntrezGene:103653165	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30
ProteinID:AQK51218.1	UniProt:B6SP61	InterPro:Beta-grasp_dom_sf	EMBL:EU954526	EMBL:EU958223	EMBL:EU958479
InterPro:Fd_pln	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0022900	GO:GO:0046872	GO:GO:0051536
GO:GO:0051537	GO:GO:0055114	InterPro:IPR001041	InterPro:IPR012675	PFAM:PF00111	ScanProsite:PS00197
PFscan:PS51085	PANTHER:PTHR43112	PANTHER:PTHR43112:SF4	SUPFAM:SSF54292	TIGRFAMs:TIGR02008	UniParc:UPI000160BA5A
EnsemblPlantsGene:Zm00001d049732	EnsemblPlants:Zm00001d049732_P001	EnsemblPlants:Zm00001d049732_T001	SEG:seg	:	:

Description

Ferredoxin-1

Coordinates

chr4:-:41916195..41916662

Molecular Weight (calculated)

16154.3 Da

IEP (calculated)

5.631

GRAVY (calculated)

0.212

Length

155 amino acids

Sequence
(BLAST)

001: MAAAAAALVS SNSLRAPAAF SVVVRAASRP APVVAVVTPL PAAKAAAARG ARLRAQATHN VKLITPDGEV QLKMPGDVYI LDHAEERGLD LPYSCRAGAC
101: SSCVGKIVSG SVNQFDQSFL DDDQVAEGFV LTCIAYPTSD LVIQTHKEDA LVESY

Best Arabidopsis Sequence Match ( AT1G60950.1 )
(BLAST)

001: MASTALSSAI VGTSFIRRSP APISLRSLPS ANTQSLFGLK SGTARGGRVT AMATYKVKFI TPEGELEVEC DDDVYVLDAA EEAGIDLPYS CRAGSCSSCA
101: GKVVSGSVDQ SDQSFLDDEQ IGEGFVLTCA AYPTSDVTIE THKEEDIV

Arabidopsis Description

FD2Ferredoxin [Source:UniProtKB/TrEMBL;Acc:A0A178W2W5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.