Factsheet for Zm00001d025352_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES10739	Sorghum	plastid	82.47	81.41
Zm00001d003797_P001	Maize	plastid	79.22	78.71
HORVU2Hr1G072880.1	Barley	plastid	66.88	68.21
TraesCS2D01G292400.1	Wheat	plastid	66.23	68.0
TraesCS2B01G311100.1	Wheat	plastid	66.23	68.0
Os04t0412200-01	Rice	plastid	62.99	63.82
Zm00001d035002_P001	Maize	plastid	46.75	52.17
Zm00001d034760_P001	Maize	mitochondrion, plastid	50.65	51.32
Zm00001d035003_P001	Maize	plastid	46.1	50.71
Bra012013.1-P	Field mustard	plastid	49.35	50.0
CDY04500	Canola	plastid	49.35	50.0
CDX71446	Canola	plastid	48.05	48.68
Zm00001d035001_P001	Maize	plastid	46.75	48.0
Zm00001d012293_P001	Maize	plastid	46.1	47.97
CDY31182	Canola	plastid	47.4	47.4
AT2G27510.1	Thale cress	plastid	47.4	47.1
Bra000507.1-P	Field mustard	plastid	46.75	46.75
CDX83271	Canola	plastid	46.75	46.75
Zm00001d049732_P001	Maize	plastid	45.45	45.16
Bra034355.1-P	Field mustard	plastid	42.21	44.52
CDX77119	Canola	plastid	44.81	44.23
CDY30545	Canola	plastid	44.16	43.87
Zm00001d010136_P001	Maize	plastid	42.86	42.86
Zm00001d038291_P001	Maize	plastid	42.86	42.86
Zm00001d033469_P001	Maize	plastid	27.27	28.0
Zm00001d013534_P002	Maize	plastid	22.08	17.71

Protein Annotations

MapMan:1.1.5.1	EntrezGene:100283643	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30
ProteinID:AQK43571.1	UniProt:B4FYW4	EMBL:BT042302	InterPro:Beta-grasp_dom_sf	EMBL:EU965392	InterPro:Fd_pln
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0022900	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537
GO:GO:0055114	InterPro:IPR001041	InterPro:IPR012675	PFAM:PF00111	ScanProsite:PS00197	PFscan:PS51085
PANTHER:PTHR43112	PANTHER:PTHR43112:SF2	SUPFAM:SSF54292	TIGRFAMs:TIGR02008	UniParc:UPI00017B82ED	EnsemblPlantsGene:Zm00001d025352
EnsemblPlants:Zm00001d025352_P001	EnsemblPlants:Zm00001d025352_T001	:	:	:	:

Description

Ferredoxin-3 chloroplastic

Coordinates

chr10:+:115194757..115195221

Molecular Weight (calculated)

16659.7 Da

IEP (calculated)

4.526

GRAVY (calculated)

-0.140

Length

154 amino acids

Sequence
(BLAST)

001: MAMATFTSSP VLCSFRTIEQ KKAPLLNNST KRPLHLGFPR SVPTSPSLRE RLDLRVAAVY KVKLLGPEGQ ESVLDVPEDS YILDAAEEAG LDLPYSCRAG
101: ACSTCAGKLL EGSVDQADQS FLDEAQVGAG YALTCVAYPT SDCVIQTHRE EDLY

Best Arabidopsis Sequence Match ( AT2G27510.1 )
(BLAST)

001: MATVRISSTS MTKAVLRSQT TNKLITNKSY NLSVGSTKRV SRSFGLKCSA NSGGATMSAV YKVKLLGPDG QEDEFEVQDD QYILDAAEEA GVDLPYSCRA
101: GACSTCAGQI VSGNVDQSDG SFLEDSHLEK GYVLTCVAYP QSDCVIHTHK ETELF

Arabidopsis Description

FD3Ferredoxin [Source:UniProtKB/TrEMBL;Acc:A0A178VWS0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.