CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034355.1-P	Field mustard	plastid	93.55	99.32
CDX77119	Canola	plastid	97.42	96.79
CDY31182	Canola	plastid	87.74	88.31
AT2G27510.1	Thale cress	plastid	87.1	87.1
CDX83271	Canola	plastid	86.45	87.01
CDY04500	Canola	plastid	83.87	85.53
CDX71446	Canola	plastid	82.58	84.21
CDY12877	Canola	plastid	47.74	50.0
CDY44833	Canola	plastid	47.74	50.0
CDY03773	Canola	plastid	47.1	49.32
CDY46194	Canola	plastid	47.1	49.32
CDY20591	Canola	plastid	47.1	49.32
CDX97925	Canola	plastid	46.45	48.65
CDY20975	Canola	plastid	46.45	48.65
CDY54581	Canola	plastid	45.81	47.97
CDY54579	Canola	plastid	45.81	47.97
HORVU2Hr1G072880.1	Barley	plastid	46.45	47.68
CDY19334	Canola	plastid	42.58	47.48
Os04t0412200-01	Rice	plastid	46.45	47.37
TraesCS2B01G311100.1	Wheat	plastid	45.81	47.33
TraesCS2D01G292400.1	Wheat	plastid	45.81	47.33
CDY33318	Canola	plastid	43.23	45.27
Zm00001d003797_P001	Maize	plastid	44.52	44.52
EES10739	Sorghum	plastid	44.52	44.23
Zm00001d025352_P001	Maize	plastid	43.87	44.16
CDX69869	Canola	plastid	40.65	42.57
CDY21622	Canola	plastid	40.65	42.28
CDY29779	Canola	plastid	31.61	34.03
CDY42796	Canola	plastid	32.26	33.11
CDY71732	Canola	cytosol	16.77	21.14
CDY66059	Canola	plastid	23.87	20.67
CDX93825	Canola	plastid	23.87	20.67
CDX84071	Canola	plastid	23.87	20.67

Protein Annotations

MapMan:1.1.5.1	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30	GO:A0A078GVQ6
UniProt:A0A078GVQ6	InterPro:Beta-grasp_dom_sf	EnsemblPlants:CDY30545	ProteinID:CDY30545	ProteinID:CDY30545.1	InterPro:Fd_pln
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0022900	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00045275001	InterPro:IPR001041	InterPro:IPR012675	PFAM:PF00111	ScanProsite:PS00197
PFscan:PS51085	PANTHER:PTHR43112	PANTHER:PTHR43112:SF4	SUPFAM:SSF54292	TIGRFAMs:TIGR02008	UniParc:UPI0004EE7698
SEG:seg	:	:	:	:	:

Description

BnaA04g15880DFerredoxin [Source:UniProtKB/TrEMBL;Acc:A0A078GVQ6]

Coordinates

chrLK032254:+:359657..360911

Molecular Weight (calculated)

16701.7 Da

IEP (calculated)

4.965

GRAVY (calculated)

-0.210

Length

155 amino acids

Sequence
(BLAST)

001: MATFQISSTS MTTKAVLRSQ PTNKLIANKS QQVSVGSVKK VSRSFGLKCS ANSGATMSAV YKVKLIGPEG EEHEFEVQDD QFILDAAEEA GVDLPYSCRA
101: GACSTCAGQI VKGQVDQSEG SFLEDDHLEK GFVLTCVAYP QSDCVIHTHK ETELF

Best Arabidopsis Sequence Match ( AT2G27510.1 )
(BLAST)

001: MATVRISSTS MTKAVLRSQT TNKLITNKSY NLSVGSTKRV SRSFGLKCSA NSGGATMSAV YKVKLLGPDG QEDEFEVQDD QYILDAAEEA GVDLPYSCRA
101: GACSTCAGQI VSGNVDQSDG SFLEDSHLEK GYVLTCVAYP QSDCVIHTHK ETELF

Arabidopsis Description

FD3Ferredoxin [Source:UniProtKB/TrEMBL;Acc:A0A178VWS0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.