CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21622	Canola	plastid	92.57	91.95
Bra009066.1-P	Field mustard	cytosol	60.14	90.82
AT5G10000.1	Thale cress	plastid	72.97	72.97
Solyc04g009710.1.1	Tomato	plastid	45.95	44.16
PGSC0003DMT400061612	Potato	plastid	41.89	41.33
PGSC0003DMT400060121	Potato	plastid	41.89	41.33
Os05t0443500-01	Rice	plastid	41.22	41.22
CDX71446	Canola	plastid	41.89	40.79
CDY30545	Canola	plastid	42.57	40.65
CDX77119	Canola	plastid	42.57	40.38
TraesCS1A01G276300.1	Wheat	plastid	40.54	39.74
CDY31182	Canola	plastid	41.22	39.61
CDY04500	Canola	plastid	40.54	39.47
Zm00001d012293_P001	Maize	plastid	39.19	39.19
TraesCS3B01G406100.1	Wheat	plastid	40.54	38.96
CDX83271	Canola	plastid	40.54	38.96
HORVU3Hr1G084210.1	Barley	plastid	39.19	38.93
TraesCS1B01G285500.1	Wheat	plastid	39.19	38.41
TraesCS3D01G366600.1	Wheat	plastid	39.86	38.31
CDY19334	Canola	plastid	35.81	38.13
TraesCS3A01G373900.1	Wheat	mitochondrion	36.49	38.03
Os01t0860601-01	Rice	plastid	41.89	37.58
CDX97925	Canola	plastid	37.16	37.16
CDY46194	Canola	plastid	36.49	36.49
CDY54581	Canola	plastid	36.49	36.49
CDY54579	Canola	plastid	36.49	36.49
CDY44833	Canola	plastid	36.49	36.49
CDY03773	Canola	plastid	36.49	36.49
CDY12877	Canola	plastid	36.49	36.49
EES19611	Sorghum	plastid	39.19	35.8
Zm00001d038291_P001	Maize	plastid	37.16	35.71
Zm00001d010136_P001	Maize	plastid	37.16	35.71
CDY20975	Canola	plastid	35.14	35.14
CDY20591	Canola	plastid	35.14	35.14
CDY33318	Canola	plastid	34.46	34.46
EES01793	Sorghum	plastid	37.16	33.33
CDY29779	Canola	plastid	27.03	27.78
CDY42796	Canola	plastid	27.03	26.49
TraesCS1D01G275800.2	Wheat	plastid	40.54	22.81
CDY71732	Canola	cytosol	16.22	19.51
CDY66059	Canola	plastid	22.3	18.44
CDX93825	Canola	plastid	22.3	18.44
CDX84071	Canola	plastid	22.3	18.44

Protein Annotations

MapMan:1.1.5.1	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30	GO:A0A078C118
InterPro:Beta-grasp_dom_sf	EnsemblPlants:CDX69869	ProteinID:CDX69869	ProteinID:CDX69869.1	InterPro:Fd_pln	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055
GO:GO:0009987	GO:GO:0022900	GO:GO:0051536	GO:GO:0051537	EnsemblPlantsGene:GSBRNA2T00135934001	InterPro:IPR001041
InterPro:IPR012675	PFAM:PF00111	ScanProsite:PS00197	PFscan:PS51085	PANTHER:PTHR43112	PANTHER:PTHR43112:SF4
SUPFAM:SSF54292	TIGRFAMs:TIGR02008	UniParc:UPI0004EF3F50	SEG:seg	:	:

Description

BnaA10g22180D

Coordinates

chrLK031790:-:2182334..2182780

Molecular Weight (calculated)

16396.8 Da

IEP (calculated)

5.235

GRAVY (calculated)

-0.161

Length

148 amino acids

Sequence
(BLAST)

001: MHIMDQLVLS WSINPPLIST SRAQLMTTLN KPYVLSFSPS LRLGNRKVFA TASRRVKLID PEGEEKEIEV NKDSCILESA EYAGMELPYS CRSGTCGTCC
101: GKIVSGKVDQ SLGSFLEEEQ IQKGYVLTCI AQPLEDCVVY THKQSDLS

Best Arabidopsis Sequence Match ( AT5G10000.1 )
(BLAST)

001: MDQVLYSSYI IKIPVISRIS PSQAQLTTRL NNTTYFGLSS SRGNFGKVFA KESRKVKLIS PEGEEQEIEG NEDCCILESA ENAGLELPYS CRSGTCGTCC
101: GKLVSGKVDQ SLGSFLEEEQ IQKGYILTCI ALPLEDCVVY THKQSDLI

Arabidopsis Description

FD4Probable ferredoxin-4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FIA7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.