Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 2
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY21622 | Canola | plastid | 92.86 | 61.07 |
| CDX69869 | Canola | plastid | 90.82 | 60.14 |
| AT5G10000.1 | Thale cress | plastid | 84.69 | 56.08 |
| Solyc04g009710.1.1 | Tomato | plastid | 64.29 | 40.91 |
| PGSC0003DMT400060121 | Potato | plastid | 60.2 | 39.33 |
| Bra034355.1-P | Field mustard | plastid | 58.16 | 39.04 |
| Os05t0443500-01 | Rice | plastid | 58.16 | 38.51 |
| TraesCS3A01G373900.1 | Wheat | mitochondrion | 55.1 | 38.03 |
| TraesCS1B01G285500.1 | Wheat | plastid | 58.16 | 37.75 |
| HORVU3Hr1G084210.1 | Barley | plastid | 57.14 | 37.58 |
| PGSC0003DMT400061612 | Potato | plastid | 57.14 | 37.33 |
| Zm00001d012293_P001 | Maize | plastid | 56.12 | 37.16 |
| TraesCS1A01G276300.1 | Wheat | plastid | 57.14 | 37.09 |
| TraesCS3B01G406100.1 | Wheat | plastid | 58.16 | 37.01 |
| TraesCS3D01G366600.1 | Wheat | plastid | 57.14 | 36.36 |
| Zm00001d010136_P001 | Maize | plastid | 56.12 | 35.71 |
| Bra012013.1-P | Field mustard | plastid | 55.1 | 35.53 |
| Bra000507.1-P | Field mustard | plastid | 55.1 | 35.06 |
| EES19611 | Sorghum | plastid | 57.14 | 34.57 |
| Os01t0860601-01 | Rice | plastid | 58.16 | 34.55 |
| Zm00001d038291_P001 | Maize | plastid | 54.08 | 34.42 |
| Bra031471.1-P | Field mustard | plastid | 50.0 | 33.11 |
| Bra027109.1-P | Field mustard | plastid | 50.0 | 33.11 |
| EES01793 | Sorghum | plastid | 54.08 | 32.12 |
| Bra018415.1-P | Field mustard | plastid | 47.96 | 31.76 |
| Bra040469.1-P | Field mustard | plastid | 47.96 | 27.01 |
| Bra036911.1-P | Field mustard | plastid | 37.76 | 24.5 |
| TraesCS1D01G275800.2 | Wheat | plastid | 58.16 | 21.67 |
| Bra023277.1-P | Field mustard | plastid | 33.67 | 18.44 |
| Bra035490.1-P | Field mustard | plastid | 32.65 | 17.88 |
Protein Annotations
| MapMan:1.1.5.1 | InterPro:2Fe-2S_ferredoxin-like_sf | InterPro:2Fe-2S_ferredoxin-type | InterPro:2Fe2S_fd_BS | Gene3D:3.10.20.30 | InterPro:Beta-grasp_dom_sf |
| EnsemblPlantsGene:Bra009066 | EnsemblPlants:Bra009066.1 | EnsemblPlants:Bra009066.1-P | InterPro:Fd_pln | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006091 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009055 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 |
| GO:GO:0022900 | GO:GO:0046872 | GO:GO:0051536 | GO:GO:0051537 | GO:GO:0055114 | InterPro:IPR001041 |
| InterPro:IPR012675 | UniProt:M4CXW9 | PFAM:PF00111 | ScanProsite:PS00197 | PFscan:PS51085 | PANTHER:PTHR43112 |
| PANTHER:PTHR43112:SF4 | SUPFAM:SSF54292 | TIGRFAMs:TIGR02008 | UniParc:UPI000254489B | SEG:seg | : |
Description
AT5G10000 (E=8e-032) ATFD4 | ATFD4 (ferredoxin 4); 2 iron, 2 sulfur cluster binding / electron carrier/ iron-sulfur cluster binding
Coordinates
chrA10:-:15107285..15107581
Molecular Weight (calculated)
10825.9 Da
IEP (calculated)
4.451
GRAVY (calculated)
-0.387
Length
98 amino acids
Sequence
(BLAST)
(BLAST)
1: MASRRVKLID PEGEEKEIEV KEGSCILESA ENAGMELPYS CRSGTCGTCC GKIVSGKVDQ SLGSFLEEEQ IQKGYILTCI AQPREDCVVY THKQTDLY
001: MDQVLYSSYI IKIPVISRIS PSQAQLTTRL NNTTYFGLSS SRGNFGKVFA KESRKVKLIS PEGEEQEIEG NEDCCILESA ENAGLELPYS CRSGTCGTCC
101: GKLVSGKVDQ SLGSFLEEEQ IQKGYILTCI ALPLEDCVVY THKQSDLI
101: GKLVSGKVDQ SLGSFLEEEQ IQKGYILTCI ALPLEDCVVY THKQSDLI
Arabidopsis Description
FD4Probable ferredoxin-4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FIA7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.