Factsheet for Zm00001d038291_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19611	Sorghum	plastid	79.87	75.93
Zm00001d010136_P001	Maize	plastid	75.32	75.32
Os05t0443500-01	Rice	plastid	72.08	75.0
Solyc05g055280.1.1	Tomato	cytosol	45.45	71.43
TraesCS1A01G276300.1	Wheat	plastid	69.48	70.86
TraesCS1B01G285500.1	Wheat	plastid	68.83	70.2
Zm00001d034760_P001	Maize	mitochondrion, plastid	57.79	58.55
Zm00001d012293_P001	Maize	plastid	54.55	56.76
Solyc11g006910.1.1	Tomato	mitochondrion, plastid	44.81	55.2
Bra009066.1-P	Field mustard	cytosol	34.42	54.08
PGSC0003DMT400060121	Potato	plastid	51.95	53.33
PGSC0003DMT400061612	Potato	plastid	50.0	51.33
Zm00001d035002_P001	Maize	plastid	40.26	44.93
Solyc04g009710.1.1	Tomato	plastid	44.81	44.81
Zm00001d035003_P001	Maize	plastid	40.26	44.29
Zm00001d003797_P001	Maize	plastid	44.16	43.87
Zm00001d035001_P001	Maize	plastid	42.21	43.33
Zm00001d025352_P001	Maize	plastid	42.86	42.86
Zm00001d049732_P001	Maize	plastid	40.91	40.65
TraesCS1D01G275800.2	Wheat	plastid	68.18	39.92
CDY21622	Canola	plastid	37.01	38.26
CDX69869	Canola	plastid	35.71	37.16
AT5G10000.1	Thale cress	plastid	35.71	37.16
Zm00001d033469_P001	Maize	plastid	26.62	27.33
Zm00001d013534_P002	Maize	plastid	26.62	21.35

Protein Annotations

MapMan:1.1.5.1	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30	UniProt:A0A1D6M542
ProteinID:AQK86240.1	InterPro:Beta-grasp_dom_sf	InterPro:Fd_pln	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0022900
GO:GO:0046872	GO:GO:0051536	GO:GO:0051537	GO:GO:0055114	InterPro:IPR001041	InterPro:IPR012675
PFAM:PF00111	ScanProsite:PS00197	PFscan:PS51085	PANTHER:PTHR43112	PANTHER:PTHR43112:SF11	SUPFAM:SSF54292
TIGRFAMs:TIGR02008	UniParc:UPI000221E567	EnsemblPlantsGene:Zm00001d038291	EnsemblPlants:Zm00001d038291_P001	EnsemblPlants:Zm00001d038291_T001	SEG:seg

Description

Ferredoxin-6%2C chloroplastic

Coordinates

chr6:-:153560369..153560833

Molecular Weight (calculated)

16155.8 Da

IEP (calculated)

5.178

GRAVY (calculated)

-0.202

Length

154 amino acids

Sequence
(BLAST)

001: MSTATAARLP APRSGASYHY QTAAPAANTL SFAGHARQAA RASGPRLSSR FVAAAAAVLH KVKLVGPDGT EHEFEAPDDT YILEAAETAG VELPFSCRAG
101: SCSTCAGRMS AGEVDQSEGS FLDDGQMAEG YLLTCISYPK ADCVIHTHKE EDLY

Best Arabidopsis Sequence Match ( AT2G27510.1 )
(BLAST)

001: MATVRISSTS MTKAVLRSQT TNKLITNKSY NLSVGSTKRV SRSFGLKCSA NSGGATMSAV YKVKLLGPDG QEDEFEVQDD QYILDAAEEA GVDLPYSCRA
101: GACSTCAGQI VSGNVDQSDG SFLEDSHLEK GYVLTCVAYP QSDCVIHTHK ETELF

Arabidopsis Description

FD3Ferredoxin [Source:UniProtKB/TrEMBL;Acc:A0A178VWS0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.