Factsheet for Zm00001d033469_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93719	Sorghum	plastid	89.33	89.93
Os03t0659200-01	Rice	plastid	80.0	81.63
TraesCS4B01G015800.1	Wheat	plastid	72.0	76.06
TraesCS4A01G297900.1	Wheat	plastid	74.0	76.03
TraesCS4D01G014200.1	Wheat	plastid	75.33	75.33
HORVU4Hr1G002520.1	Barley	plastid	74.0	75.0
KRH77855	Soybean	plastid	62.0	63.27
KRH27637	Soybean	mitochondrion, plastid	60.0	61.22
VIT_05s0020g03490.t01	Wine grape	plastid	59.33	60.54
PGSC0003DMT400086140	Potato	plastid	58.67	58.67
CDY29779	Canola	plastid	54.67	56.94
AT4G14890.1	Thale cress	plastid	58.0	56.49
Bra036911.1-P	Field mustard	plastid	54.67	54.3
CDY42796	Canola	plastid	54.0	53.64
Solyc03g005190.2.1	Tomato	nucleus	60.0	30.72
Zm00001d035003_P001	Maize	plastid	28.67	30.71
Zm00001d035002_P001	Maize	plastid	27.33	29.71
Zm00001d012293_P001	Maize	plastid	28.67	29.05
Zm00001d034760_P001	Maize	mitochondrion, plastid	28.67	28.29
Zm00001d025352_P001	Maize	plastid	28.0	27.27
Zm00001d003797_P001	Maize	plastid	28.0	27.1
Zm00001d035001_P001	Maize	plastid	26.67	26.67
Zm00001d038291_P001	Maize	plastid	27.33	26.62
Zm00001d010136_P001	Maize	plastid	26.67	25.97
Zm00001d049732_P001	Maize	plastid	26.67	25.81
Zm00001d013534_P002	Maize	plastid	24.67	19.27

Protein Annotations

EntrezGene:100284745	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	Gene3D:3.10.20.30	MapMan:35.1	ProteinID:AAT42183.1
InterPro:Beta-grasp_dom_sf	EMBL:EU969539	EMBL:EU976468	InterPro:Fd_pln	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009536	GO:GO:0009628
GO:GO:0009644	GO:GO:0009987	GO:GO:0022900	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537
GO:GO:0055114	InterPro:IPR001041	InterPro:IPR012675	ProteinID:ONM07654.1	PFAM:PF00111	PFscan:PS51085
PANTHER:PTHR43112	PANTHER:PTHR43112:SF9	UniProt:Q6JAD2	SUPFAM:SSF54292	TIGRFAMs:TIGR02008	UniParc:UPI00003B0437
EnsemblPlantsGene:Zm00001d033469	EnsemblPlants:Zm00001d033469_P001	EnsemblPlants:Zm00001d033469_T001	SEG:seg	:	:

Description

Ferredoxin%3B Putative ferredoxin

Coordinates

chr1:-:263524861..263525313

Molecular Weight (calculated)

16029.2 Da

IEP (calculated)

4.773

GRAVY (calculated)

-0.014

Length

150 amino acids

Sequence
(BLAST)

001: MAAASASLLH LATPTLTRST RLAVRLPSAQ LSRWPSGARI AAAQPPRAYK VTIEHGGESR VVEVEEDETI LSRALDEGLD VPHDCKLGVC MTCPARLVSG
101: TVDQSDGMLS DDVVARGYAL LCAAYPRSDC TIRVIPEDEL LKVQLATADD

Best Arabidopsis Sequence Match ( AT4G14890.1 )
(BLAST)

001: MATLPLPTQT STISLPKPYL SNSFSFPLRN ATLSTTTNRR NFLTTGRIIA RAYKVVVEHD GKTTELEVEP DETILSKALD SGLDVPYDCN LGVCMTCPAK
101: LVTGTVDQSG GMLSDDVVER GYTLLCASYP TSDCHIKMIP EEELLSLQLA TAND

Arabidopsis Description

FdC2Ferredoxin C 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O23344]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.