CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29779	Canola	plastid	88.08	92.36
Bra036911.1-P	Field mustard	plastid	91.39	91.39
AT4G14890.1	Thale cress	plastid	85.43	83.77
KRH27637	Soybean	mitochondrion, plastid	64.9	66.67
KRH77855	Soybean	plastid	63.58	65.31
PGSC0003DMT400086140	Potato	plastid	61.59	62.0
VIT_05s0020g03490.t01	Wine grape	plastid	58.28	59.86
Zm00001d033469_P001	Maize	plastid	53.64	54.0
EER93719	Sorghum	plastid	52.32	53.02
Os03t0659200-01	Rice	plastid	50.33	51.7
TraesCS4B01G015800.1	Wheat	plastid	48.34	51.41
TraesCS4D01G014200.1	Wheat	plastid	49.67	50.0
TraesCS4A01G297900.1	Wheat	plastid	48.34	50.0
HORVU4Hr1G002520.1	Barley	plastid	49.01	50.0
CDY04500	Canola	plastid	33.77	33.55
CDY31182	Canola	plastid	33.11	32.47
CDY30545	Canola	plastid	33.11	32.26
CDX71446	Canola	plastid	32.45	32.24
CDX77119	Canola	plastid	33.11	32.05
CDX83271	Canola	plastid	32.45	31.82
Solyc03g005190.2.1	Tomato	nucleus	60.93	31.4
CDY20591	Canola	plastid	30.46	31.08
CDY03773	Canola	plastid	29.8	30.41
CDY54581	Canola	plastid	29.8	30.41
CDY54579	Canola	plastid	29.8	30.41
CDY46194	Canola	plastid	29.8	30.41
CDY44833	Canola	plastid	29.8	30.41
CDY33318	Canola	plastid	29.14	29.73
CDY20975	Canola	plastid	29.14	29.73
CDY12877	Canola	plastid	29.14	29.73
CDX97925	Canola	plastid	28.48	29.05
CDY19334	Canola	plastid	26.49	28.78
CDX69869	Canola	plastid	26.49	27.03
CDY21622	Canola	plastid	26.49	26.85
CDY66059	Canola	plastid	27.15	22.91
CDX84071	Canola	plastid	27.15	22.91
CDX93825	Canola	plastid	27.15	22.91
CDY71732	Canola	cytosol	17.88	21.95

Protein Annotations

InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	Gene3D:3.10.20.30	MapMan:35.1	GO:A0A078HYQ1	UniProt:A0A078HYQ1
InterPro:Beta-grasp_dom_sf	EnsemblPlants:CDY42796	ProteinID:CDY42796	ProteinID:CDY42796.1	InterPro:Fd_pln	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0022900	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00075361001	InterPro:IPR001041	InterPro:IPR012675	PFAM:PF00111	PFscan:PS51085	PANTHER:PTHR43112
PANTHER:PTHR43112:SF9	SUPFAM:SSF54292	TIGRFAMs:TIGR02008	UniParc:UPI000182B92C	SEG:seg	:

Description

BnaC01g22700DFerredoxin [Source:UniProtKB/TrEMBL;Acc:A0A078HYQ1]

Coordinates

chrLK032534:+:201901..202737

Molecular Weight (calculated)

16461.8 Da

IEP (calculated)

4.298

GRAVY (calculated)

-0.018

Length

151 amino acids

Sequence
(BLAST)

001: MATLPLPITT TISLPKPCIS NSFSFPFRNV SLSTRTRRMY LTGGVVSRSY KVVVEQDGKT TELEVEPDET ILSKALESGM DVPYDCNLGV CMTCPAKLVT
101: GTVDQSDGML SEDVVERGYA LLCASYPTSD CHIKMIPEEE LLSLQLATAN D

Best Arabidopsis Sequence Match ( AT4G14890.1 )
(BLAST)

001: MATLPLPTQT STISLPKPYL SNSFSFPLRN ATLSTTTNRR NFLTTGRIIA RAYKVVVEHD GKTTELEVEP DETILSKALD SGLDVPYDCN LGVCMTCPAK
101: LVTGTVDQSG GMLSDDVVER GYTLLCASYP TSDCHIKMIP EEELLSLQLA TAND

Arabidopsis Description

FdC2Ferredoxin C 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O23344]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.