CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30545	Canola	plastid	96.79	97.42
Bra034355.1-P	Field mustard	plastid	91.03	97.26
CDY31182	Canola	plastid	85.9	87.01
CDX83271	Canola	plastid	84.62	85.71
AT2G27510.1	Thale cress	plastid	84.62	85.16
CDY04500	Canola	plastid	82.05	84.21
CDX71446	Canola	plastid	80.77	82.89
CDY44833	Canola	plastid	46.79	49.32
CDY12877	Canola	plastid	46.79	49.32
CDY03773	Canola	plastid	46.15	48.65
CDY46194	Canola	plastid	46.15	48.65
CDY20591	Canola	plastid	46.15	48.65
CDY20975	Canola	plastid	45.51	47.97
CDX97925	Canola	plastid	45.51	47.97
CDY19334	Canola	plastid	42.31	47.48
Os04t0412200-01	Rice	plastid	46.15	47.37
CDY54579	Canola	plastid	44.87	47.3
CDY54581	Canola	plastid	44.87	47.3
HORVU2Hr1G072880.1	Barley	plastid	45.51	47.02
TraesCS2B01G311100.1	Wheat	plastid	44.87	46.67
TraesCS2D01G292400.1	Wheat	plastid	44.87	46.67
EES10739	Sorghum	plastid	44.87	44.87
Zm00001d025352_P001	Maize	plastid	44.23	44.81
CDY33318	Canola	plastid	42.31	44.59
Zm00001d003797_P001	Maize	plastid	44.23	44.52
CDX69869	Canola	plastid	40.38	42.57
CDY21622	Canola	plastid	40.38	42.28
CDY29779	Canola	plastid	31.41	34.03
CDY42796	Canola	plastid	32.05	33.11
CDY71732	Canola	cytosol	16.67	21.14
CDX93825	Canola	plastid	23.08	20.11
CDX84071	Canola	plastid	23.08	20.11
CDY66059	Canola	plastid	23.08	20.11

Protein Annotations

MapMan:1.1.5.1	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30	GO:A0A078CM65
InterPro:Beta-grasp_dom_sf	EnsemblPlants:CDX77119	ProteinID:CDX77119	ProteinID:CDX77119.1	InterPro:Fd_pln	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055
GO:GO:0009987	GO:GO:0022900	GO:GO:0051536	GO:GO:0051537	EnsemblPlantsGene:GSBRNA2T00127719001	InterPro:IPR001041
InterPro:IPR012675	PFAM:PF00111	ScanProsite:PS00197	PFscan:PS51085	PANTHER:PTHR43112	PANTHER:PTHR43112:SF4
SUPFAM:SSF54292	TIGRFAMs:TIGR02008	UniParc:UPI0004EE5850	SEG:seg	:	:

Description

BnaC04g39140D

Coordinates

chrLK031809:-:1238344..1239767

Molecular Weight (calculated)

16787.8 Da

IEP (calculated)

4.769

GRAVY (calculated)

-0.181

Length

156 amino acids

Sequence
(BLAST)

001: MATFQISSTS MTTKAVLRTQ PTNKLIANNS PQVSVGSVKK VSRSFGLKCS ANSGATMMSA VYKVKLIGPE GEEHEFDVQD DQFILDAAEE AGVDLPYSCR
101: AGACSTCAGQ IVKGQVDQSE GSFLEDDHLE KGFVLTCVAY PQSDCVIHTH KETELF

Best Arabidopsis Sequence Match ( AT2G27510.1 )
(BLAST)

001: MATVRISSTS MTKAVLRSQT TNKLITNKSY NLSVGSTKRV SRSFGLKCSA NSGGATMSAV YKVKLLGPDG QEDEFEVQDD QYILDAAEEA GVDLPYSCRA
101: GACSTCAGQI VSGNVDQSDG SFLEDSHLEK GYVLTCVAYP QSDCVIHTHK ETELF

Arabidopsis Description

FD3Ferredoxin [Source:UniProtKB/TrEMBL;Acc:A0A178VWS0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.