CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023277.1-P	Field mustard	plastid	100.0	100.0
CDY66059	Canola	plastid	89.39	89.39
CDX84071	Canola	plastid	89.39	89.39
CDY71732	Canola	cytosol	56.98	82.93
AT1G32550.2	Thale cress	plastid	88.83	81.96
GSMUA_Achr5P18450_001	Banana	plastid	62.01	74.0
VIT_02s0012g00980.t01	Wine grape	plastid	70.95	67.55
Solyc08g077050.2.1	Tomato	plastid	72.07	67.54
PGSC0003DMT400045201	Potato	plastid	72.07	67.54
KRH58205	Soybean	mitochondrion, plastid	66.48	66.48
KRH04332	Soybean	mitochondrion, plastid	66.48	66.48
Os03t0685000-01	Rice	plastid	66.48	65.03
EER93655	Sorghum	plastid	65.36	62.57
TraesCS4A01G286700.1	Wheat	plastid	63.69	61.96
TraesCS4D01G025700.1	Wheat	plastid	63.13	61.41
TraesCS4B01G028100.1	Wheat	plastid	63.69	61.29
Zm00001d013534_P002	Maize	plastid	64.25	59.9
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, vacuole	65.36	52.94
CDY20975	Canola	plastid	25.14	30.41
CDY29779	Canola	plastid	22.35	27.78
CDY44833	Canola	plastid	22.91	27.7
CDY46194	Canola	plastid	22.91	27.7
CDY54579	Canola	plastid	22.91	27.7
CDY54581	Canola	plastid	22.91	27.7
CDY03773	Canola	plastid	22.91	27.7
CDY20591	Canola	plastid	22.91	27.7
CDY12877	Canola	plastid	22.91	27.7
CDY42796	Canola	plastid	22.91	27.15
CDX97925	Canola	plastid	22.35	27.03
CDX71446	Canola	plastid	22.91	26.97
CDY19334	Canola	plastid	20.67	26.62
CDY04500	Canola	plastid	22.35	26.32
CDY33318	Canola	plastid	21.23	25.68
HORVU4Hr1G004210.8	Barley	cytosol	30.73	25.0
CDX83271	Canola	plastid	20.67	24.03
CDY31182	Canola	plastid	20.67	24.03
CDY30545	Canola	plastid	20.67	23.87
CDX77119	Canola	plastid	20.11	23.08
CDY21622	Canola	plastid	18.99	22.82
CDX69869	Canola	plastid	18.44	22.3

Protein Annotations

InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	Gene3D:3.10.20.30	MapMan:35.1	GO:A0A078DWZ9	InterPro:Beta-grasp_dom_sf
EnsemblPlants:CDX93825	ProteinID:CDX93825	ProteinID:CDX93825.1	InterPro:Fd_pln	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987
GO:GO:0022900	GO:GO:0051536	GO:GO:0051537	EnsemblPlantsGene:GSBRNA2T00156605001	InterPro:IPR001041	InterPro:IPR012675
PFAM:PF00111	PFscan:PS51085	PANTHER:PTHR43112	PANTHER:PTHR43112:SF10	SUPFAM:SSF54292	TIGRFAMs:TIGR02008
UniParc:UPI0002542274	:	:	:	:	:

Description

BnaA09g24250D

Coordinates

chrLK031877:+:1289202..1291150

Molecular Weight (calculated)

20228.9 Da

IEP (calculated)

5.931

GRAVY (calculated)

-0.367

Length

179 amino acids

Sequence
(BLAST)

001: MALVFHCTSC TWLQRKTFPI NRRYSTNIRR GATTCEYRIP VEISSPADRG ALAVPSHKVT VHDRQRGVVH EFEVPEDQYI LHSAESQNIN LPFACRHGCC
101: TSCAVRVKSG DLRQPQALGI SAELKSQGYA LLCVGFPTSD LEVETQDEDE VYWLQFGRYF ARGPIERDDY ALELAMGDE

Best Arabidopsis Sequence Match ( AT1G32550.1 )
(BLAST)

001: MALILPCTFC TSLQKKNFPI NRRYITNFRR GATTATCEFR IPVEVSTPSD RGSLVVPSHK VTVHDRQRGV VHEFEVPEDQ YILHSAESQN ISLPFACRHG
101: CCTSCAVRVK SGELRQPQAL GISAELKSQG YALLCVGFPT SDLEVETQDE DEVYWLQFGR YFARGPIERD DYALELAMGD E

Arabidopsis Description

FdC12Fe-2S ferredoxin-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IE99]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.