Factsheet for VIT_02s0012g00980.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P18450_001	Banana	plastid	64.89	81.33
Solyc08g077050.2.1	Tomato	plastid	81.38	80.1
PGSC0003DMT400045201	Potato	plastid	81.38	80.1
CDY71732	Canola	cytosol	49.47	75.61
Bra035490.1-P	Field mustard	plastid	68.62	72.07
CDX84071	Canola	plastid	68.09	71.51
CDY66059	Canola	plastid	68.09	71.51
Bra023277.1-P	Field mustard	plastid	67.55	70.95
CDX93825	Canola	plastid	67.55	70.95
KRH58205	Soybean	mitochondrion, plastid	66.49	69.83
Os03t0685000-01	Rice	plastid	67.55	69.4
KRH04332	Soybean	mitochondrion, plastid	65.96	69.27
AT1G32550.2	Thale cress	plastid	67.55	65.46
EER93655	Sorghum	plastid	63.83	64.17
TraesCS4A01G286700.1	Wheat	plastid	62.23	63.59
TraesCS4D01G025700.1	Wheat	plastid	61.7	63.04
TraesCS4B01G028100.1	Wheat	plastid	62.23	62.9
Zm00001d013534_P002	Maize	plastid	63.83	62.5
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, vacuole	69.68	59.28
VIT_12s0035g00270.t01	Wine grape	plastid	23.4	30.99
VIT_05s0020g03490.t01	Wine grape	plastid	23.94	30.61
HORVU4Hr1G004210.8	Barley	cytosol	31.91	27.27
VIT_13s0147g00110.t01	Wine grape	plastid	21.28	23.81
VIT_06s0080g00410.t01	Wine grape	plastid	21.28	22.22

Protein Annotations

EntrezGene:100242061	wikigene:100242061	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	Gene3D:3.10.20.30	MapMan:35.1
InterPro:Beta-grasp_dom_sf	ProteinID:CBI33910	ProteinID:CBI33910.3	UniProt:D7TTZ5	EMBL:FN596247	InterPro:Fd_pln
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0022900	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537
GO:GO:0055114	InterPro:IPR001041	InterPro:IPR012675	EntrezGene:LOC100242061	wikigene:LOC100242061	PFAM:PF00111
PFscan:PS51085	PANTHER:PTHR43112	PANTHER:PTHR43112:SF10	SUPFAM:SSF54292	TIGRFAMs:TIGR02008	UniParc:UPI0001982C56
ArrayExpress:VIT_02s0012g00980	EnsemblPlantsGene:VIT_02s0012g00980	EnsemblPlants:VIT_02s0012g00980.t01	unigene:Vvi.19508	RefSeq:XP_002281131	RefSeq:XP_002281131.1

Description

Ferredoxin [Source:UniProtKB/TrEMBL;Acc:D7TTZ5]

Coordinates

chr2:+:6915210..6925655

Molecular Weight (calculated)

21003.9 Da

IEP (calculated)

6.496

GRAVY (calculated)

-0.338

Length

188 amino acids

Sequence
(BLAST)

001: MDLLPLCNSC TSIHRQPTLY RKLSSPSITN FPYNSLKCRR KTTSELQTPV GVTGLAGGYS PSIPTHKVTV HDRQRGVVHE FFVPEDQYIL HTAESQNISL
101: PFACRHGCCT SCAVRIKSGQ IRQPEALGIS AELKSKGYAL LCVGFPSSDI EVETQDEDEV YWLQFGRYFA RGPIERDDYA LELAMGDE

Best Arabidopsis Sequence Match ( AT1G32550.1 )
(BLAST)

001: MALILPCTFC TSLQKKNFPI NRRYITNFRR GATTATCEFR IPVEVSTPSD RGSLVVPSHK VTVHDRQRGV VHEFEVPEDQ YILHSAESQN ISLPFACRHG
101: CCTSCAVRVK SGELRQPQAL GISAELKSQG YALLCVGFPT SDLEVETQDE DEVYWLQFGR YFARGPIERD DYALELAMGD E

Arabidopsis Description

FdC12Fe-2S ferredoxin-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IE99]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.