Factsheet for Zm00001d013534_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93655	Sorghum	plastid	92.19	94.65
TraesCS4A01G286700.1	Wheat	plastid	76.04	79.35
TraesCS4B01G028100.1	Wheat	plastid	76.04	78.49
TraesCS4D01G025700.1	Wheat	plastid	75.0	78.26
GSMUA_Achr5P18450_001	Banana	plastid	60.42	77.33
Os03t0685000-01	Rice	plastid	73.44	77.05
CDY71732	Canola	cytosol	44.79	69.92
KRH58205	Soybean	mitochondrion, plastid	61.98	66.48
KRH04332	Soybean	mitochondrion, plastid	60.94	65.36
Bra023277.1-P	Field mustard	plastid	59.9	64.25
Bra035490.1-P	Field mustard	plastid	59.9	64.25
CDX93825	Canola	plastid	59.9	64.25
VIT_02s0012g00980.t01	Wine grape	plastid	62.5	63.83
CDX84071	Canola	plastid	59.38	63.69
CDY66059	Canola	plastid	59.38	63.69
Solyc08g077050.2.1	Tomato	plastid	61.98	62.3
PGSC0003DMT400045201	Potato	plastid	61.98	62.3
AT1G32550.2	Thale cress	plastid	59.38	58.76
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, vacuole	66.15	57.47
HORVU4Hr1G004210.8	Barley	cytosol	31.77	27.73
Zm00001d035003_P001	Maize	plastid	19.79	27.14
Zm00001d012293_P001	Maize	plastid	20.83	27.03
Zm00001d038291_P001	Maize	plastid	21.35	26.62
Zm00001d035002_P001	Maize	plastid	18.75	26.09
Zm00001d010136_P001	Maize	plastid	19.79	24.68
Zm00001d033469_P001	Maize	plastid	19.27	24.67
Zm00001d034760_P001	Maize	mitochondrion, plastid	19.27	24.34
Zm00001d035001_P001	Maize	plastid	18.75	24.0
Zm00001d003797_P001	Maize	plastid	18.75	23.23
Zm00001d025352_P001	Maize	plastid	17.71	22.08
Zm00001d049732_P001	Maize	plastid	16.67	20.65

Protein Annotations

EntrezGene:103625981	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	Gene3D:3.10.20.30	MapMan:35.1	ProteinID:AQK63792.1
EMBL:BT068403	InterPro:Beta-grasp_dom_sf	UniProt:C0PJD4	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0005488	GO:GO:0006091	GO:GO:0006139	GO:GO:0006259	GO:GO:0008150	GO:GO:0008152
GO:GO:0009055	GO:GO:0009987	GO:GO:0015074	GO:GO:0022900	GO:GO:0051536	InterPro:IPR001041
InterPro:IPR012675	PFAM:PF00111	PFscan:PS51085	PANTHER:PTHR43112	PANTHER:PTHR43112:SF10	SUPFAM:SSF54292
UniParc:UPI000195CDE6	EnsemblPlantsGene:Zm00001d013534	EnsemblPlants:Zm00001d013534_P002	EnsemblPlants:Zm00001d013534_T002	SEG:seg	:

Description

2Fe-2S ferredoxin-like superfamily protein

Coordinates

chr5:-:13764127..13782004

Molecular Weight (calculated)

21271.2 Da

IEP (calculated)

6.994

GRAVY (calculated)

-0.390

Length

192 amino acids

Sequence
(BLAST)

001: MTCPAATATA TTARIGARRG PCLWRSERRA SFLVRSTSLL PDRPARDTRA RAASELQQAP RPASATVPAH KVTVHDRQRG VIHEFVVPED QYILHTAEAQ
101: DIRLPFACRH GCCTSCAVRI KSGQIRQPEA LGISAELKDK GYALLCVGFP SGDVEVETQD EDEVYWLQFG RYFARGPVER DDYALELAMG DE

Best Arabidopsis Sequence Match ( AT1G32550.1 )
(BLAST)

001: MALILPCTFC TSLQKKNFPI NRRYITNFRR GATTATCEFR IPVEVSTPSD RGSLVVPSHK VTVHDRQRGV VHEFEVPEDQ YILHSAESQN ISLPFACRHG
101: CCTSCAVRVK SGELRQPQAL GISAELKSQG YALLCVGFPT SDLEVETQDE DEVYWLQFGR YFARGPIERD DYALELAMGD E

Arabidopsis Description

FdC12Fe-2S ferredoxin-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IE99]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.