CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 7
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58205	Soybean	mitochondrion, plastid	94.97	94.97
GSMUA_Achr5P18450_001	Banana	plastid	62.57	74.67
CDY71732	Canola	cytosol	49.16	71.54
Os03t0685000-01	Rice	plastid	69.83	68.31
Bra035490.1-P	Field mustard	plastid	68.16	68.16
CDX84071	Canola	plastid	67.6	67.6
CDY66059	Canola	plastid	67.6	67.6
Bra023277.1-P	Field mustard	plastid	66.48	66.48
CDX93825	Canola	plastid	66.48	66.48
VIT_02s0012g00980.t01	Wine grape	plastid	69.27	65.96
Solyc08g077050.2.1	Tomato	plastid	68.72	64.4
PGSC0003DMT400045201	Potato	plastid	68.72	64.4
EER93655	Sorghum	plastid	65.92	63.1
AT1G32550.2	Thale cress	plastid	68.16	62.89
TraesCS4D01G025700.1	Wheat	plastid	63.13	61.41
TraesCS4B01G028100.1	Wheat	plastid	63.69	61.29
Zm00001d013534_P002	Maize	plastid	65.36	60.94
TraesCS4A01G286700.1	Wheat	plastid	62.57	60.87
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, vacuole	63.13	51.13
KRH44081	Soybean	cytosol	19.55	34.65
KRH26360	Soybean	nucleus, plastid	24.02	29.25
KRH59154	Soybean	nucleus, plastid	23.46	28.57
KRH43040	Soybean	nucleus, plastid	22.91	28.47
KRH26361	Soybean	nucleus	22.35	27.21
HORVU4Hr1G004210.8	Barley	cytosol	32.96	26.82
KRH77855	Soybean	plastid	21.79	26.53
KRH26359	Soybean	mitochondrion, plastid	24.58	25.29
KRH27637	Soybean	mitochondrion, plastid	20.67	25.17
KRH36019	Soybean	plastid	21.23	24.68
KRG90740	Soybean	plastid	21.23	24.68
KRH25235	Soybean	plastid	18.99	22.52
KRH30423	Soybean	plastid	18.99	21.94

Protein Annotations

EntrezGene:100782906	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	Gene3D:3.10.20.30	MapMan:35.1	EMBL:ACUP02010400
InterPro:Beta-grasp_dom_sf	InterPro:Fd_pln	EnsemblPlantsGene:GLYMA_17G154900	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0022900
GO:GO:0046872	GO:GO:0051536	GO:GO:0051537	GO:GO:0055114	UniProt:I1MVE7	InterPro:IPR001041
InterPro:IPR012675	EnsemblPlants:KRH04332	ProteinID:KRH04332	ProteinID:KRH04332.1	PFAM:PF00111	PFscan:PS51085
PANTHER:PTHR43112	PANTHER:PTHR43112:SF10	SUPFAM:SSF54292	TIGRFAMs:TIGR02008	UniParc:UPI000233F3AE	SEG:seg

Description

hypothetical protein

Coordinates

chr17:-:13079959..13084677

Molecular Weight (calculated)

19895.6 Da

IEP (calculated)

5.934

GRAVY (calculated)

-0.322

Length

179 amino acids

Sequence
(BLAST)

001: MALPLLRIPG IPLAKQHQSF PSNTRRKATT AQAELETAVA RTGGTGYQSP SVDVPTHKVI VHDRQRGIVH EFVVPEDQYI LHTAEAQNIT LPFACRHGCC
101: TSCAVRIKNG KIRQPEALGI SAELRDKGYA LLCVGFPTSD VEVETQDEDE VYWLQFGRYF ARGPVERDDY ALELAMADE

Best Arabidopsis Sequence Match ( AT1G32550.1 )
(BLAST)

001: MALILPCTFC TSLQKKNFPI NRRYITNFRR GATTATCEFR IPVEVSTPSD RGSLVVPSHK VTVHDRQRGV VHEFEVPEDQ YILHSAESQN ISLPFACRHG
101: CCTSCAVRVK SGELRQPQAL GISAELKSQG YALLCVGFPT SDLEVETQDE DEVYWLQFGR YFARGPIERD DYALELAMGD E

Arabidopsis Description

FdC12Fe-2S ferredoxin-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IE99]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.