Factsheet for PGSC0003DMT400045201

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g077050.2.1	Tomato	plastid	96.86	96.86
VIT_02s0012g00980.t01	Wine grape	plastid	80.1	81.38
GSMUA_Achr5P18450_001	Banana	plastid	61.26	78.0
CDY71732	Canola	cytosol	49.21	76.42
CDX84071	Canola	plastid	70.16	74.86
CDY66059	Canola	plastid	70.16	74.86
Bra035490.1-P	Field mustard	plastid	70.16	74.86
CDX93825	Canola	plastid	67.54	72.07
Bra023277.1-P	Field mustard	plastid	67.54	72.07
Os03t0685000-01	Rice	plastid	67.54	70.49
KRH58205	Soybean	mitochondrion, plastid	64.92	69.27
KRH04332	Soybean	mitochondrion, plastid	64.4	68.72
AT1G32550.2	Thale cress	plastid	69.11	68.04
TraesCS4A01G286700.1	Wheat	plastid	62.3	64.67
TraesCS4D01G025700.1	Wheat	plastid	61.78	64.13
EER93655	Sorghum	plastid	62.3	63.64
TraesCS4B01G028100.1	Wheat	plastid	61.78	63.44
Zm00001d013534_P002	Maize	plastid	62.3	61.98
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, vacuole	65.97	57.01
PGSC0003DMT400011522	Potato	plastid	23.56	33.09
PGSC0003DMT400087715	Potato	cytosol, plastid	17.28	31.73
PGSC0003DMT400031198	Potato	cytosol, extracellular, plastid	22.51	29.86
PGSC0003DMT400015058	Potato	plastid	23.56	29.8
PGSC0003DMT400061612	Potato	plastid	23.04	29.33
PGSC0003DMT400067774	Potato	plastid	23.04	29.33
PGSC0003DMT400060121	Potato	plastid	22.51	28.67
PGSC0003DMT400086140	Potato	plastid	21.99	28.0
HORVU4Hr1G004210.8	Barley	cytosol	31.41	27.27

Protein Annotations

EntrezGene:102594244	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	Gene3D:3.10.20.30	MapMan:35.1	InterPro:Beta-grasp_dom_sf
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0022900	GO:GO:0051536	InterPro:IPR001041	InterPro:IPR012675
UniProt:M1BH97	PFAM:PF00111	EnsemblPlantsGene:PGSC0003DMG400017532	PGSC:PGSC0003DMG400017532	EnsemblPlants:PGSC0003DMT400045201	PFscan:PS51085
PANTHER:PTHR43112	PANTHER:PTHR43112:SF10	SUPFAM:SSF54292	UniParc:UPI000295E1A6	RefSeq:XP_006352847.1	:

Description

Ferredoxin-2 [Source:PGSC_GENE;Acc:PGSC0003DMG400017532]

Coordinates

chr8:+:49785694..49792409

Molecular Weight (calculated)

21144.1 Da

IEP (calculated)

6.650

GRAVY (calculated)

-0.280

Length

191 amino acids

Sequence
(BLAST)

001: MDLQSPCSAC TSLHRKPPLV RRLSSLNSVN FPLNSVKCRW KTSPKVQTPV AVAISGQNGS SYSPSVPTHK VTVLDRQRGV VHEFLVPEDQ YILHTAEAQN
101: ITLPFACRHG CCTSCAVRVK SGELRQPEAL GISAELKSKG YALLCVGFPS SDLEVETQDE DEVYWLQFGR YFARGPIERD DYALELAMGD E

Best Arabidopsis Sequence Match ( AT1G32550.1 )
(BLAST)

001: MALILPCTFC TSLQKKNFPI NRRYITNFRR GATTATCEFR IPVEVSTPSD RGSLVVPSHK VTVHDRQRGV VHEFEVPEDQ YILHSAESQN ISLPFACRHG
101: CCTSCAVRVK SGELRQPQAL GISAELKSQG YALLCVGFPT SDLEVETQDE DEVYWLQFGR YFARGPIERD DYALELAMGD E

Arabidopsis Description

FdC12Fe-2S ferredoxin-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IE99]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.