Factsheet for PGSC0003DMT400060121

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g055280.1.1	Tomato	cytosol	60.67	92.86
PGSC0003DMT400061612	Potato	plastid	84.0	84.0
PGSC0003DMT400015058	Potato	plastid	64.67	64.24
PGSC0003DMT400067774	Potato	plastid	62.67	62.67
Bra009066.1-P	Field mustard	cytosol	39.33	60.2
Os05t0443500-01	Rice	plastid	56.0	56.76
TraesCS1B01G285500.1	Wheat	plastid	53.33	52.98
TraesCS1A01G276300.1	Wheat	plastid	53.33	52.98
HORVU3Hr1G084210.1	Barley	plastid	52.0	52.35
Zm00001d038291_P001	Maize	plastid	53.33	51.95
EES19611	Sorghum	plastid	56.0	51.85
TraesCS3A01G373900.1	Wheat	mitochondrion	48.67	51.41
TraesCS3B01G406100.1	Wheat	plastid	52.67	51.3
PGSC0003DMT400011522	Potato	plastid	46.0	50.74
Zm00001d012293_P001	Maize	plastid	50.0	50.68
TraesCS3D01G366600.1	Wheat	plastid	52.0	50.65
Os01t0860601-01	Rice	plastid	54.0	49.09
Zm00001d010136_P001	Maize	plastid	50.0	48.7
PGSC0003DMT400031198	Potato	cytosol, extracellular, plastid	46.0	47.92
PGSC0003DMT400087715	Potato	cytosol, plastid	32.0	46.15
EES01793	Sorghum	plastid	49.33	44.85
AT5G10000.1	Thale cress	plastid	43.33	43.92
CDY21622	Canola	plastid	43.33	43.62
CDX69869	Canola	plastid	41.33	41.89
PGSC0003DMT400086140	Potato	plastid	34.67	34.67
TraesCS1D01G275800.2	Wheat	plastid	54.0	30.8
PGSC0003DMT400045201	Potato	plastid	28.67	22.51

Protein Annotations

MapMan:1.1.5.1	EntrezGene:102581844	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	Gene3D:3.10.20.30	InterPro:Beta-grasp_dom_sf
InterPro:Fd_pln	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0022900	GO:GO:0046872	GO:GO:0051536
GO:GO:0051537	GO:GO:0055114	InterPro:IPR001041	InterPro:IPR012675	UniProt:M1C599	PFAM:PF00111
EnsemblPlantsGene:PGSC0003DMG400023391	PGSC:PGSC0003DMG400023391	EnsemblPlants:PGSC0003DMT400060121	PFscan:PS51085	PANTHER:PTHR43112	PANTHER:PTHR43112:SF12
SUPFAM:SSF54292	TIGRFAMs:TIGR02008	UniParc:UPI000295B379	RefSeq:XP_015163558.1	RefSeq:XP_015163559.1	SEG:seg

Description

Ferredoxin-3, chloroplast [Source:PGSC_GENE;Acc:PGSC0003DMG400023391]

Coordinates

chr5:-:50956295..50959091

Molecular Weight (calculated)

16004.9 Da

IEP (calculated)

4.657

GRAVY (calculated)

-0.127

Length

150 amino acids

Sequence
(BLAST)

001: MSTASIPSGS LLKVAPSIRS SAFTKSQVSL SSVKSISKAF GLKSSSSFKV SAMATYKVKL ISPDGKENEI EVADDEYILD KAEEAGVELP YSCRAGSCCT
101: CAGQLVSGTV DQSEGAFLDE DQMEKGYLLT CISYPRSDCV IHTHKEEDVV

Best Arabidopsis Sequence Match ( AT1G10960.1 )
(BLAST)

001: MASTALSSAI VSTSFLRRQQ TPISLRSLPF ANTQSLFGLK SSTARGGRVT AMATYKVKFI TPEGEQEVEC EEDVYVLDAA EEAGLDLPYS CRAGSCSSCA
101: GKVVSGSIDQ SDQSFLDDEQ MSEGYVLTCV AYPTSDVVIE THKEEAIM

Arabidopsis Description

FD1Ferredoxin-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O04090]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.