Factsheet for PGSC0003DMT400011522

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
vacuole 1
plastid 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001613
PGSC0003DMT400032525
PGSC0003DMT400058521

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10960.1	PGSC0003DMT400001613	AT3G47620.1	21798944
AT1G60950.1	PGSC0003DMT400032525	AT4G22890.1	18243102
AT1G60950.1	PGSC0003DMT400058521	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g103920.2.1	Tomato	plastid	94.85	92.14
VIT_12s0035g00270.t01	Wine grape	plastid	69.12	66.2
PGSC0003DMT400031198	Potato	cytosol, extracellular, plastid	69.12	65.28
KRH59154	Soybean	nucleus, plastid	69.85	64.63
KRH43040	Soybean	nucleus, plastid	68.38	64.58
PGSC0003DMT400087715	Potato	cytosol, plastid	47.06	61.54
AT1G60950.1	Thale cress	plastid	64.71	59.46
AT1G10960.1	Thale cress	plastid	64.71	59.46
GSMUA_Achr5P01200_001	Banana	plastid	62.5	59.44
CDY20591	Canola	plastid	63.24	58.11
CDY20975	Canola	plastid	62.5	57.43
CDY44833	Canola	plastid	62.5	57.43
CDY03773	Canola	plastid	62.5	57.43
Zm00001d035002_P001	Maize	plastid	58.09	57.25
CDY12877	Canola	plastid	61.76	56.76
Bra031471.1-P	Field mustard	plastid	61.76	56.76
Bra027109.1-P	Field mustard	plastid	61.76	56.76
Bra018415.1-P	Field mustard	plastid	61.76	56.76
CDY54581	Canola	plastid	61.76	56.76
CDY54579	Canola	plastid	61.76	56.76
CDY46194	Canola	plastid	61.76	56.76
EES13199	Sorghum	plastid	58.09	55.24
Os08t0104600-02	Rice	extracellular	55.88	54.68
HORVU7Hr1G077750.1	Barley	plastid	56.62	54.61
TraesCS7D01G322100.1	Wheat	plastid	56.62	54.61
HORVU7Hr1G077740.1	Barley	plastid	57.35	54.55
TraesCS7A01G325400.1	Wheat	plastid	57.35	54.55
TraesCS7D01G322000.1	Wheat	plastid	57.35	54.55
TraesCS7B01G226100.1	Wheat	plastid	57.35	54.55
TraesCS7B01G226200.1	Wheat	plastid	56.62	54.23
TraesCS7A01G325500.1	Wheat	plastid	56.62	54.23
EES13198	Sorghum	plastid	57.35	54.17
CDX97925	Canola	plastid	58.82	54.05
CDY19334	Canola	plastid	55.15	53.96
CDY33318	Canola	plastid	58.09	53.38
Zm00001d035003_P001	Maize	plastid	54.41	52.86
KXG24178	Sorghum	plastid	57.35	51.66
Zm00001d035001_P001	Maize	plastid	56.62	51.33
PGSC0003DMT400015058	Potato	plastid	54.41	49.01
PGSC0003DMT400061612	Potato	plastid	50.74	46.0
PGSC0003DMT400060121	Potato	plastid	50.74	46.0
Bra040469.1-P	Field mustard	plastid	58.82	45.98
PGSC0003DMT400067774	Potato	plastid	50.0	45.33
Zm00001d049732_P001	Maize	plastid	51.47	45.16
PGSC0003DMT400086140	Potato	plastid	31.62	28.67
PGSC0003DMT400045201	Potato	plastid	33.09	23.56

Protein Annotations

MapMan:1.1.5.1	EntrezGene:102599819	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30
InterPro:Beta-grasp_dom_sf	InterPro:Fd_pln	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009055	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0022900	GO:GO:0046872
GO:GO:0051536	GO:GO:0051537	GO:GO:0055114	InterPro:IPR001041	InterPro:IPR012675	UniProt:M0ZZP3
PFAM:PF00111	EnsemblPlantsGene:PGSC0003DMG400004532	PGSC:PGSC0003DMG400004532	EnsemblPlants:PGSC0003DMT400011522	ScanProsite:PS00197	PFscan:PS51085
PANTHER:PTHR43112	PANTHER:PTHR43112:SF4	SUPFAM:SSF54292	TIGRFAMs:TIGR02008	UniParc:UPI000295E9F4	RefSeq:XP_006349353.1
SEG:seg	:	:	:	:	:

Description

Chloroplast ferredoxin I [Source:PGSC_GENE;Acc:PGSC0003DMG400004532]

Coordinates

chr1:-:80558637..80559287

Molecular Weight (calculated)

14605.2 Da

IEP (calculated)

4.165

GRAVY (calculated)

-0.116

Length

136 amino acids

Sequence
(BLAST)

001: MASISGTMIS TSFMPRKPIV TFPDLLGVKY ANGGKITCMA TYKVKLITPS GAVEFDCPDD VYILDQAEEE GHELPYSCRA GSCSSCAGKI VSGSVDQSDG
101: NFLEDEQISS GYVLTCVAYP QSDVTIETHK EEQLTS

Best Arabidopsis Sequence Match ( AT1G60950.1 )
(BLAST)

001: MASTALSSAI VGTSFIRRSP APISLRSLPS ANTQSLFGLK SGTARGGRVT AMATYKVKFI TPEGELEVEC DDDVYVLDAA EEAGIDLPYS CRAGSCSSCA
101: GKVVSGSVDQ SDQSFLDDEQ IGEGFVLTCA AYPTSDVTIE THKEEDIV

Arabidopsis Description

FD2Ferredoxin [Source:UniProtKB/TrEMBL;Acc:A0A178W2W5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.