Factsheet for GSMUA_Achr5P01200_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P12240_001
GSMUA_Achr4P00500_001
GSMUA_Achr4P28830_001
GSMUA_Achr6P02720_001
GSMUA_Achr7P17990_001
GSMUA_Achr7P20990_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10960.1	GSMUA_Achr4P00500_001	AT3G47620.1	21798944
AT1G10960.1	GSMUA_Achr6P02720_001	AT3G47620.1	21798944
AT1G10960.1	GSMUA_Achr7P17990_001	AT3G47620.1	21798944
AT1G10960.1	GSMUA_Achr7P20990_001	AT3G47620.1	21798944
AT1G60950.1	GSMUA_Achr2P12240_001	AT4G22890.1	18243102
AT1G60950.1	GSMUA_Achr4P28830_001	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44081	Soybean	cytosol	51.75	73.27
GSMUA_Achr8P32490_001	Banana	cytosol	34.97	72.46
VIT_12s0035g00270.t01	Wine grape	plastid	70.63	71.13
AT1G60950.1	Thale cress	plastid	72.73	70.27
CDY03773	Canola	plastid	72.03	69.59
Bra031471.1-P	Field mustard	plastid	71.33	68.92
CDY54581	Canola	plastid	71.33	68.92
CDY46194	Canola	plastid	71.33	68.92
CDY54579	Canola	plastid	71.33	68.92
CDY44833	Canola	plastid	70.63	68.24
Bra027109.1-P	Field mustard	plastid	69.93	67.57
CDY12877	Canola	plastid	69.93	67.57
CDY20591	Canola	plastid	69.93	67.57
Bra018415.1-P	Field mustard	plastid	69.23	66.89
GSMUA_Achr5P00940_001	Banana	cytosol	45.45	66.33
AT1G10960.1	Thale cress	plastid	68.53	66.22
CDY33318	Canola	plastid	68.53	66.22
CDY20975	Canola	plastid	68.53	66.22
Solyc10g044520.1.1	Tomato	plastid	66.43	65.97
CDY19334	Canola	plastid	62.94	64.75
KRH26361	Soybean	nucleus	66.43	64.63
Solyc10g075160.1.1	Tomato	plastid	65.03	64.58
PGSC0003DMT400031198	Potato	cytosol, extracellular, plastid	64.34	63.89
KRH59154	Soybean	nucleus, plastid	64.34	62.59
KRH43040	Soybean	nucleus, plastid	62.94	62.5
PGSC0003DMT400011522	Potato	plastid	59.44	62.5
CDX97925	Canola	plastid	64.34	62.16
Solyc01g103920.2.1	Tomato	plastid	60.14	61.43
GSMUA_Achr11P...	Banana	cytosol	43.36	61.39
Bra040469.1-P	Field mustard	plastid	68.53	56.32
PGSC0003DMT400087715	Potato	cytosol, plastid	40.56	55.77
KRH26359	Soybean	mitochondrion, plastid	67.83	55.75
GSMUA_Achr11P...	Banana	plastid	51.75	28.03
GSMUA_Achr5P18450_001	Banana	plastid	22.38	21.33
GSMUA_Achr11P...	Banana	cytosol, endoplasmic reticulum, vacuole	25.87	16.74

Protein Annotations

MapMan:1.1.5.1	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30	InterPro:Beta-grasp_dom_sf
InterPro:Fd_pln	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0022900	GO:GO:0046872	GO:GO:0051536
GO:GO:0051537	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr5G01200_001	EnsemblPlants:GSMUA_Achr5P01200_001	EnsemblPlants:GSMUA_Achr5T01200_001	InterPro:IPR001041
InterPro:IPR012675	UniProt:M0SUP9	PFAM:PF00111	ScanProsite:PS00197	PFscan:PS51085	PANTHER:PTHR43112
PANTHER:PTHR43112:SF4	SUPFAM:SSF54292	TIGRFAMs:TIGR02008	UniParc:UPI000296DACC	SEG:seg	:

Description

Ferredoxin-2, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr5G01200_001]

Coordinates

chr5:-:693697..694287

Molecular Weight (calculated)

14899.6 Da

IEP (calculated)

4.216

GRAVY (calculated)

0.136

Length

143 amino acids

Sequence
(BLAST)

001: MASASALSLG TPFALRQSAG VSLRALPKLG RSLFGVDAGR GRVTAMAVYK VKLLTPEGEK VIECPDDVYI LDAAEEAEID LPYSCHAGSC SSCAGKVVQG
101: SVDQSDGSFL DDDQIGAGFV LTCVAYPTSD VVIETHKEED LVG

Best Arabidopsis Sequence Match ( AT1G60950.1 )
(BLAST)

001: MASTALSSAI VGTSFIRRSP APISLRSLPS ANTQSLFGLK SGTARGGRVT AMATYKVKFI TPEGELEVEC DDDVYVLDAA EEAGIDLPYS CRAGSCSSCA
101: GKVVSGSVDQ SDQSFLDDEQ IGEGFVLTCA AYPTSDVTIE THKEEDIV

Arabidopsis Description

FD2Ferredoxin [Source:UniProtKB/TrEMBL;Acc:A0A178W2W5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.