CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 7
cytosol 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44081	Soybean	cytosol	47.7	82.18
KRH26360	Soybean	nucleus, plastid	62.07	73.47
KRH26361	Soybean	nucleus	61.49	72.79
GSMUA_Achr5P01200_001	Banana	plastid	55.75	67.83
TraesCS7D01G322100.1	Wheat	plastid	54.6	67.38
TraesCS7B01G226200.1	Wheat	plastid	54.6	66.9
HORVU7Hr1G077750.1	Barley	plastid	54.02	66.67
TraesCS7A01G325500.1	Wheat	plastid	54.02	66.2
KRH59154	Soybean	nucleus, plastid	55.75	65.99
KRH43040	Soybean	nucleus, plastid	54.6	65.97
HORVU7Hr1G077740.1	Barley	plastid	54.02	65.73
TraesCS7D01G322000.1	Wheat	plastid	54.02	65.73
TraesCS7A01G325400.1	Wheat	plastid	53.45	65.03
TraesCS7B01G226100.1	Wheat	plastid	53.45	65.03
Zm00001d035002_P001	Maize	plastid	49.43	62.32
EES13199	Sorghum	plastid	50.0	60.84
EES13198	Sorghum	plastid	49.43	59.72
Os08t0104600-02	Rice	extracellular	47.7	59.71
KXG24178	Sorghum	plastid	51.15	58.94
Zm00001d035001_P001	Maize	plastid	50.57	58.67
Zm00001d035003_P001	Maize	plastid	45.4	56.43
KRH25235	Soybean	plastid	44.25	50.99
KRH36019	Soybean	plastid	44.83	50.65
KRG90740	Soybean	plastid	44.25	50.0
KRH30423	Soybean	plastid	44.25	49.68
Zm00001d049732_P001	Maize	plastid	43.1	48.39
KRH27637	Soybean	mitochondrion, plastid	26.44	31.29
KRH77855	Soybean	plastid	24.71	29.25
KRH04332	Soybean	mitochondrion, plastid	25.29	24.58
KRH58205	Soybean	mitochondrion, plastid	24.71	24.02

Protein Annotations

MapMan:1.1.5.1	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30	EMBL:ACUP02007708
InterPro:Beta-grasp_dom_sf	InterPro:Fd_pln	EnsemblPlantsGene:GLYMA_12G169400	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0022900
GO:GO:0046872	GO:GO:0051536	GO:GO:0051537	GO:GO:0055114	InterPro:IPR001041	InterPro:IPR012675
UniProt:K7LVE8	EnsemblPlants:KRH26359	ProteinID:KRH26359	ProteinID:KRH26359.1	PFAM:PF00111	ScanProsite:PS00197
PFscan:PS51085	PANTHER:PTHR43112	PANTHER:PTHR43112:SF4	SUPFAM:SSF54292	TIGRFAMs:TIGR02008	UniParc:UPI0001CAB9F5
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:32440613..32441734

Molecular Weight (calculated)

19227.9 Da

IEP (calculated)

7.685

GRAVY (calculated)

-0.368

Length

174 amino acids

Sequence
(BLAST)

001: MQAPRCYLFI YLSTRRRRRR RSKRERGENM ATTGALCGTM LNTSFLKRQA SVNMTSFKAN AAVFGVKGGR GGRVRAMATY KVKLITPEGE QEFECPDDIY
101: ILDQAEENGI DLPYSCRAGS CSACAAKVVS GKLDQSDGSF LDDDQIDAGF VLTCVAYPTS DIVIETHREE ELTA

Best Arabidopsis Sequence Match ( AT1G60950.1 )
(BLAST)

001: MASTALSSAI VGTSFIRRSP APISLRSLPS ANTQSLFGLK SGTARGGRVT AMATYKVKFI TPEGELEVEC DDDVYVLDAA EEAGIDLPYS CRAGSCSSCA
101: GKVVSGSVDQ SDQSFLDDEQ IGEGFVLTCA AYPTSDVTIE THKEEDIV

Arabidopsis Description

FD2Ferredoxin [Source:UniProtKB/TrEMBL;Acc:A0A178W2W5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.