CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88112
EES07255
KXG34948
KXG37086
OQU78269

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10960.1	EER88112	AT3G47620.1	21798944
AT1G10960.1	EES07255	AT3G47620.1	21798944
AT1G10960.1	OQU78269	AT5G42980.1	15352244
AT1G60950.1	KXG34948	AT4G22890.1	18243102
AT1G60950.1	KXG37086	AT4G22890.1	18243102
AT1G60950.1	OQU78269	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES13199	Sorghum	plastid	82.12	86.71
Zm00001d035002_P001	Maize	plastid	73.51	80.43
EES13198	Sorghum	plastid	74.17	77.78
Zm00001d035001_P001	Maize	plastid	76.82	77.33
TraesCS7D01G322100.1	Wheat	plastid	71.52	76.6
Os08t0104600-02	Rice	extracellular	70.2	76.26
TraesCS7B01G226200.1	Wheat	plastid	71.52	76.06
TraesCS7A01G325500.1	Wheat	plastid	71.52	76.06
HORVU7Hr1G077750.1	Barley	plastid	70.86	75.89
TraesCS7B01G226100.1	Wheat	plastid	70.2	74.13
TraesCS7A01G325400.1	Wheat	plastid	70.2	74.13
GSMUA_Achr8P32490_001	Banana	cytosol	33.77	73.91
TraesCS7D01G322000.1	Wheat	plastid	69.54	73.43
HORVU7Hr1G077740.1	Barley	plastid	69.54	73.43
KRH44081	Soybean	cytosol	45.7	68.32
KRH26360	Soybean	nucleus, plastid	58.28	59.86
CDY44833	Canola	plastid	57.62	58.78
CDY12877	Canola	plastid	57.62	58.78
Bra027109.1-P	Field mustard	plastid	57.62	58.78
VIT_12s0035g00270.t01	Wine grape	plastid	54.97	58.45
CDY03773	Canola	plastid	56.95	58.11
Bra031471.1-P	Field mustard	plastid	56.95	58.11
CDY46194	Canola	plastid	56.95	58.11
PGSC0003DMT400087715	Potato	cytosol, plastid	39.74	57.69
Solyc10g044520.1.1	Tomato	plastid	54.97	57.64
CDY54581	Canola	plastid	56.29	57.43
CDY54579	Canola	plastid	56.29	57.43
PGSC0003DMT400011522	Potato	plastid	51.66	57.35
Solyc01g103920.2.1	Tomato	plastid	52.98	57.14
KRH26361	Soybean	nucleus	54.97	56.46
AT1G60950.1	Thale cress	plastid	54.3	55.41
CDY20591	Canola	plastid	54.3	55.41
Solyc10g075160.1.1	Tomato	plastid	52.32	54.86
AT1G10960.1	Thale cress	plastid	53.64	54.73
KRH43040	Soybean	nucleus, plastid	51.66	54.17
Bra018415.1-P	Field mustard	plastid	52.98	54.05
CDY20975	Canola	plastid	52.98	54.05
PGSC0003DMT400031198	Potato	cytosol, extracellular, plastid	50.99	53.47
CDY19334	Canola	plastid	49.01	53.24
KRH59154	Soybean	nucleus, plastid	51.66	53.06
CDY33318	Canola	plastid	51.66	52.7
CDX97925	Canola	plastid	51.66	52.7
KRH26359	Soybean	mitochondrion, plastid	58.94	51.15
EES10739	Sorghum	plastid	49.01	47.44
Bra040469.1-P	Field mustard	plastid	52.98	45.98
EER93144	Sorghum	plastid	45.7	45.7
EES01793	Sorghum	plastid	41.72	38.18
EES19611	Sorghum	plastid	39.74	37.04
EER93719	Sorghum	plastid	26.49	26.85
EER93655	Sorghum	plastid	23.84	19.25

Protein Annotations

MapMan:1.1.5.1	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30	UniProt:A0A1B6PES8
InterPro:Beta-grasp_dom_sf	InterPro:Fd_pln	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009055	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0022900	GO:GO:0046872
GO:GO:0051536	GO:GO:0051537	GO:GO:0055114	InterPro:IPR001041	InterPro:IPR012675	EnsemblPlants:KXG24178
ProteinID:KXG24178	ProteinID:KXG24178.1	PFAM:PF00111	ScanProsite:PS00197	PFscan:PS51085	PANTHER:PTHR43112
PANTHER:PTHR43112:SF3	EnsemblPlantsGene:SORBI_3007G004800	SUPFAM:SSF54292	TIGRFAMs:TIGR02008	UniParc:UPI0001CAA2D3	SEG:seg

Description

hypothetical protein

Coordinates

chr7:+:437410..438347

Molecular Weight (calculated)

15606.3 Da

IEP (calculated)

4.196

GRAVY (calculated)

0.096

Length

151 amino acids

Sequence
(BLAST)

001: MATVLSSLRA PASTFPSSLR VAAAPAAPAT VALLPAAGNK VPGMAARGAR LRAQATYNVK LVTPEGEVEL QCPDDVYILD QAQEEGIDLP YSCRAGSCSS
101: CAGKVVAGSV DQSDQSFLDD DQIAAGWVLT CHAYPTSDVV IATHLEDELT G

Best Arabidopsis Sequence Match ( AT1G60950.1 )
(BLAST)

001: MASTALSSAI VGTSFIRRSP APISLRSLPS ANTQSLFGLK SGTARGGRVT AMATYKVKFI TPEGELEVEC DDDVYVLDAA EEAGIDLPYS CRAGSCSSCA
101: GKVVSGSVDQ SDQSFLDDEQ IGEGFVLTCA AYPTSDVTIE THKEEDIV

Arabidopsis Description

FD2Ferredoxin [Source:UniProtKB/TrEMBL;Acc:A0A178W2W5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.