CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 6
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Plant-mPloc:	cytosol, plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88112
EES07255
KXG34948
KXG37086
OQU78269

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10960.1	EER88112	AT3G47620.1	21798944
AT1G10960.1	EES07255	AT3G47620.1	21798944
AT1G10960.1	OQU78269	AT5G42980.1	15352244
AT1G60950.1	KXG34948	AT4G22890.1	18243102
AT1G60950.1	KXG37086	AT4G22890.1	18243102
AT1G60950.1	OQU78269	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0104600-02	Rice	extracellular	76.39	79.14
EES13199	Sorghum	plastid	77.78	78.32
TraesCS7B01G226200.1	Wheat	plastid	77.08	78.17
TraesCS7A01G325500.1	Wheat	plastid	77.08	78.17
TraesCS7D01G322100.1	Wheat	plastid	76.39	78.01
HORVU7Hr1G077750.1	Barley	plastid	75.69	77.31
TraesCS7B01G226100.1	Wheat	plastid	74.31	74.83
TraesCS7A01G325400.1	Wheat	plastid	74.31	74.83
KXG24178	Sorghum	plastid	77.78	74.17
TraesCS7D01G322000.1	Wheat	plastid	73.61	74.13
HORVU7Hr1G077740.1	Barley	plastid	73.61	74.13
GSMUA_Achr8P32490_001	Banana	cytosol	34.72	72.46
Zm00001d035003_P001	Maize	plastid	68.75	70.71
KRH44081	Soybean	cytosol	45.14	64.36
KRH26361	Soybean	nucleus	60.42	59.18
KRH26360	Soybean	nucleus, plastid	60.42	59.18
AT1G60950.1	Thale cress	plastid	60.42	58.78
VIT_12s0035g00270.t01	Wine grape	plastid	57.64	58.45
CDY46194	Canola	plastid	59.72	58.11
Bra027109.1-P	Field mustard	plastid	59.72	58.11
Bra031471.1-P	Field mustard	plastid	59.72	58.11
CDY03773	Canola	plastid	59.72	58.11
CDY12877	Canola	plastid	59.72	58.11
CDY44833	Canola	plastid	59.72	58.11
CDY54579	Canola	plastid	59.03	57.43
CDY54581	Canola	plastid	59.03	57.43
PGSC0003DMT400011522	Potato	plastid	54.17	57.35
AT1G10960.1	Thale cress	plastid	58.33	56.76
CDY20591	Canola	plastid	58.33	56.76
Bra018415.1-P	Field mustard	plastid	58.33	56.76
Solyc01g103920.2.1	Tomato	plastid	54.86	56.43
PGSC0003DMT400031198	Potato	cytosol, extracellular, plastid	56.25	56.25
CDY20975	Canola	plastid	57.64	56.08
PGSC0003DMT400087715	Potato	cytosol, plastid	40.28	55.77
Solyc10g044520.1.1	Tomato	plastid	54.17	54.17
KRH43040	Soybean	nucleus, plastid	54.17	54.17
CDY19334	Canola	plastid	52.08	53.96
Solyc10g075160.1.1	Tomato	plastid	53.47	53.47
CDX97925	Canola	plastid	54.86	53.38
CDY33318	Canola	plastid	54.17	52.7
KRH59154	Soybean	nucleus, plastid	53.47	52.38
KRH26359	Soybean	mitochondrion, plastid	59.72	49.43
EER93144	Sorghum	plastid	50.0	47.68
Bra040469.1-P	Field mustard	plastid	55.56	45.98
EES10739	Sorghum	plastid	47.92	44.23
EES01793	Sorghum	plastid	47.22	41.21
EES19611	Sorghum	plastid	44.44	39.51
EER93719	Sorghum	plastid	27.78	26.85
EER93655	Sorghum	plastid	27.78	21.39

Protein Annotations

MapMan:1.1.5.1	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30	EntrezGene:8068511
InterPro:Beta-grasp_dom_sf	UniProt:C5YLG2	EnsemblPlants:EES13198	ProteinID:EES13198	ProteinID:EES13198.1	InterPro:Fd_pln
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0022900	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537
GO:GO:0055114	InterPro:IPR001041	InterPro:IPR012675	PFAM:PF00111	ScanProsite:PS00197	PFscan:PS51085
PANTHER:PTHR43112	PANTHER:PTHR43112:SF4	EnsemblPlantsGene:SORBI_3007G004600	SUPFAM:SSF54292	unigene:Sbi.20193	SignalP:SignalP-noTM
TIGRFAMs:TIGR02008	TMHMM:TMhelix	UniParc:UPI0001A876C3	RefSeq:XP_002443703.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr7:+:432240..434201

Molecular Weight (calculated)

14792.3 Da

IEP (calculated)

4.014

GRAVY (calculated)

0.143

Length

144 amino acids

Sequence
(BLAST)

001: MATALSSLRA PAAFSLGIAA APAPAAAATV VALPAAKPAR GARLRAQATY NVKLITPDGE VELQVPDDVY ILDQAEEEGI DLPFSCRAGS CSSCAGKVVS
101: GTVDQSDQSF LDDAQVEGGW VLTCAAYPTS DVVIETHKEE DLVG

Best Arabidopsis Sequence Match ( AT1G60950.1 )
(BLAST)

001: MASTALSSAI VGTSFIRRSP APISLRSLPS ANTQSLFGLK SGTARGGRVT AMATYKVKFI TPEGELEVEC DDDVYVLDAA EEAGIDLPYS CRAGSCSSCA
101: GKVVSGSVDQ SDQSFLDDEQ IGEGFVLTCA AYPTSDVTIE THKEEDIV

Arabidopsis Description

FD2Ferredoxin [Source:UniProtKB/TrEMBL;Acc:A0A178W2W5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.