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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 4
  • mitochondrion 4
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:plastid
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:plastid
 plastid: 22160430
msms PMID: 22160430 doi
AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo
Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS1A01G325600.1
TraesCS1B01G338800.1
TraesCS1B01G339000.1
TraesCS1D01G327500.1
TraesCS4A01G319000.1
TraesCS5B01G560400.1
TraesCS5D01G569800.1
TraesCS6A01G306500.1
TraesCS6B01G334900.1
TraesCS6D01G285600.1
TraesCS7A01G562100.1
TraesCS7B01G091900.1
TraesCS7D01G001000.1
TraesCS7D01G187600.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G10960.1 TraesCS6A01G306500.1 AT3G47620.1 21798944
AT1G10960.1 TraesCS6B01G334900.1 AT3G47620.1 21798944
AT1G10960.1 TraesCS6D01G285600.1 AT3G47620.1 21798944
AT1G10960.1 TraesCS7B01G091900.1 AT3G47620.1 21798944
AT1G10960.1 TraesCS7D01G187600.1 AT3G47620.1 21798944
AT1G10960.1 TraesCS1A01G325600.1 AT5G42980.1 15352244
AT1G10960.1 TraesCS1B01G338800.1 AT5G42980.1 15352244
AT1G10960.1 TraesCS1B01G339000.1 AT5G42980.1 15352244
AT1G10960.1 TraesCS1D01G327500.1 AT5G42980.1 15352244
AT1G10960.1 TraesCS7A01G562100.1 AT5G42980.1 15352244
AT1G10960.1 TraesCS7D01G001000.1 AT5G42980.1 15352244
AT1G60950.1 TraesCS4A01G319000.1 AT4G22890.1 18243102
AT1G60950.1 TraesCS5B01G560400.1 AT4G22890.1 18243102
AT1G60950.1 TraesCS5D01G569800.1 AT4G22890.1 18243102
AT1G60950.1 TraesCS1A01G325600.1 AT5G42980.1 15352244
AT1G60950.1 TraesCS1B01G338800.1 AT5G42980.1 15352244
AT1G60950.1 TraesCS1B01G339000.1 AT5G42980.1 15352244
AT1G60950.1 TraesCS1D01G327500.1 AT5G42980.1 15352244
AT1G60950.1 TraesCS7A01G562100.1 AT5G42980.1 15352244
AT1G60950.1 TraesCS7D01G001000.1 AT5G42980.1 15352244
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS7A01G325400.1 Wheat plastid 100.0 100.0
HORVU7Hr1G077740.1 Barley plastid 99.3 99.3
TraesCS7D01G322000.1 Wheat plastid 99.3 99.3
GSMUA_Achr8P32490_001 Banana cytosol 37.76 78.26
TraesCS7B01G226200.1 Wheat plastid 76.22 76.76
EES13198 Sorghum plastid 74.83 74.31
Os08t0104600-02 Rice extracellular 72.03 74.1
EES13199 Sorghum plastid 72.73 72.73
Zm00001d035002_P001 Maize plastid 69.23 71.74
KXG24178 Sorghum plastid 74.13 70.2
KRH44081 Soybean cytosol 48.95 69.31
Zm00001d035001_P001 Maize plastid 71.33 68.0
Zm00001d035003_P001 Maize plastid 62.24 63.57
VIT_12s0035g00270.t01 Wine grape plastid 62.24 62.68
Solyc10g044520.1.1 Tomato plastid 60.14 59.72
AT1G10960.1 Thale cress plastid 60.14 58.11
CDY20975 Canola plastid 60.14 58.11
Bra018415.1-P Field mustard plastid 59.44 57.43
PGSC0003DMT400011522 Potato plastid 54.55 57.35
Solyc01g103920.2.1 Tomato plastid 55.94 57.14
KRH26361 Soybean nucleus 58.74 57.14
CDY46194 Canola plastid 58.74 56.76
CDY20591 Canola plastid 58.74 56.76
CDY12877 Canola plastid 58.74 56.76
Bra031471.1-P Field mustard plastid 58.74 56.76
Bra027109.1-P Field mustard plastid 58.74 56.76
KRH43040 Soybean nucleus, plastid 56.64 56.25
AT1G60950.1 Thale cress plastid 58.04 56.08
CDY03773 Canola plastid 58.04 56.08
CDY44833 Canola plastid 58.04 56.08
KRH26360 Soybean nucleus, plastid 57.34 55.78
CDY54581 Canola plastid 57.34 55.41
CDY54579 Canola plastid 57.34 55.41
PGSC0003DMT400087715 Potato cytosol, plastid 39.86 54.81
KRH59154 Soybean nucleus, plastid 55.94 54.42
Zm00001d049732_P001 Maize plastid 58.74 54.19
PGSC0003DMT400031198 Potato cytosol, extracellular, plastid 54.55 54.17
KRH26359 Soybean mitochondrion, plastid 65.03 53.45
Solyc10g075160.1.1 Tomato plastid 53.15 52.78
CDY33318 Canola plastid 53.85 52.03
CDX97925 Canola plastid 53.85 52.03
CDY19334 Canola plastid 50.35 51.8
TraesCS1B01G416500.1 Wheat cytosol 33.57 49.48
TraesCS3B01G406100.1 Wheat plastid 52.45 48.7
TraesCS5B01G516000.1 Wheat plastid 52.45 48.7
TraesCS2B01G311100.1 Wheat plastid 48.25 46.0
Bra040469.1-P Field mustard plastid 53.85 44.25
TraesCS1B01G285500.1 Wheat plastid 46.15 43.71
TraesCS5B01G517300.1 Wheat plastid 39.86 37.75
TraesCS4B01G015800.1 Wheat plastid 29.37 29.58
TraesCS4B01G028100.1 Wheat plastid 30.07 23.12
Protein Annotations
MapMan:1.1.5.1InterPro:2Fe-2S_ferredoxin-like_sfInterPro:2Fe-2S_ferredoxin-typeInterPro:2Fe2S_fd_BSGene3D:3.10.20.30InterPro:Beta-grasp_dom_sf
InterPro:Fd_plnGO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0006091GO:GO:0008150
GO:GO:0008152GO:GO:0009055GO:GO:0009987GO:GO:0022900GO:GO:0051536GO:GO:0051537
InterPro:IPR001041InterPro:IPR012675PFAM:PF00111ScanProsite:PS00197PFscan:PS51085PANTHER:PTHR43112
PANTHER:PTHR43112:SF7SUPFAM:SSF54292TIGRFAMs:TIGR02008EnsemblPlantsGene:TraesCS7B01G226100EnsemblPlants:TraesCS7B01G226100.1TIGR:cd00207
SEG:seg:::::
Description
No Description!
Coordinates
chr7B:+:426788558..426789415
Molecular Weight (calculated)
15287.1 Da
IEP (calculated)
4.302
GRAVY (calculated)
-0.083
Length
143 amino acids
Sequence
(BLAST)
001: MAAALSLRAP FSLRAVAPPA PRVALAPAAL SLAAAKQVRG ARLRAQATYK VKLVTPEGEV ELEVPDDVYI LDQAEEEGID LPYSCRAGSC SSCAGKLVSG
101: EIDQSDQSFL DDDQMEAGWV LTCHAYPKSD IVIETHKEEE LTA
Best Arabidopsis Sequence Match ( AT1G60950.1 )
(BLAST)
001: MASTALSSAI VGTSFIRRSP APISLRSLPS ANTQSLFGLK SGTARGGRVT AMATYKVKFI TPEGELEVEC DDDVYVLDAA EEAGIDLPYS CRAGSCSSCA
101: GKVVSGSVDQ SDQSFLDDEQ IGEGFVLTCA AYPTSDVTIE THKEEDIV
Arabidopsis Description
FD2Ferredoxin [Source:UniProtKB/TrEMBL;Acc:A0A178W2W5]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.