Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | cytosol | 62.89 | 60.4 |
| Solyc11g068430.1.1 | Tomato | nucleus | 63.92 | 50.0 |
| EER93144 | Sorghum | plastid | 74.23 | 47.68 |
| Zm00001d034760_P001 | Maize | mitochondrion, plastid | 72.16 | 46.05 |
| Os03t0835900-01 | Rice | plastid | 72.16 | 45.75 |
| TraesCS5B01G516000.1 | Wheat | plastid | 70.1 | 44.16 |
| PGSC0003DMT400015058 | Potato | plastid | 67.01 | 43.05 |
| PGSC0003DMT400067774 | Potato | plastid | 61.86 | 40.0 |
| KRH25235 | Soybean | plastid | 60.82 | 39.07 |
| KRH30423 | Soybean | plastid | 60.82 | 38.06 |
| TraesCS2B01G311100.1 | Wheat | plastid | 57.73 | 37.33 |
| TraesCS1B01G285500.1 | Wheat | plastid | 54.64 | 35.1 |
| VIT_13s0147g00110.t01 | Wine grape | plastid | 59.79 | 34.52 |
| VIT_06s0080g00410.t01 | Wine grape | plastid | 63.92 | 34.44 |
| TraesCS3B01G406100.1 | Wheat | plastid | 53.61 | 33.77 |
| TraesCS7B01G226100.1 | Wheat | plastid | 49.48 | 33.57 |
| TraesCS5B01G517300.1 | Wheat | plastid | 51.55 | 33.11 |
| TraesCS7B01G226200.1 | Wheat | plastid | 48.45 | 33.1 |
| TraesCS4B01G015800.1 | Wheat | plastid | 30.93 | 21.13 |
| TraesCS4B01G028100.1 | Wheat | plastid | 28.87 | 15.05 |
Protein Annotations
| MapMan:1.1.5.1 | InterPro:2Fe-2S_ferredoxin-like_sf | InterPro:2Fe-2S_ferredoxin-type | InterPro:2Fe2S_fd_BS | Gene3D:3.10.20.30 | InterPro:Beta-grasp_dom_sf |
| InterPro:Fd_pln | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0006091 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009055 | GO:GO:0009987 | GO:GO:0022900 | GO:GO:0051536 | GO:GO:0051537 |
| InterPro:IPR001041 | InterPro:IPR012675 | PFAM:PF00111 | ScanProsite:PS00197 | PFscan:PS51085 | PANTHER:PTHR43112 |
| PANTHER:PTHR43112:SF4 | SUPFAM:SSF54292 | TIGRFAMs:TIGR02008 | EnsemblPlantsGene:TraesCS1B01G416500 | EnsemblPlants:TraesCS1B01G416500.1 | TIGR:cd00207 |
Description
No Description!
Coordinates
chr1B:+:641519494..641519787
Molecular Weight (calculated)
10556.2 Da
IEP (calculated)
4.379
GRAVY (calculated)
-0.438
Length
97 amino acids
Sequence
(BLAST)
(BLAST)
1: MAVYEVKLVT LEGQEHDFDT GRHLHLGCRG DASVELPNSC HLGACSTCAG KIDCGTVDQS DGSFLDDAQQ EEGYMPTCVS YPKSDCVMHT HKEGDLY
001: MATVRISSTS MTKAVLRSQT TNKLITNKSY NLSVGSTKRV SRSFGLKCSA NSGGATMSAV YKVKLLGPDG QEDEFEVQDD QYILDAAEEA GVDLPYSCRA
101: GACSTCAGQI VSGNVDQSDG SFLEDSHLEK GYVLTCVAYP QSDCVIHTHK ETELF
101: GACSTCAGQI VSGNVDQSDG SFLEDSHLEK GYVLTCVAYP QSDCVIHTHK ETELF
Arabidopsis Description
FD3Ferredoxin [Source:UniProtKB/TrEMBL;Acc:A0A178VWS0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.