Factsheet for VIT_06s0080g00410.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P00940_001	Banana	cytosol	45.56	83.67
GSMUA_Achr11P...	Banana	cytosol	44.44	79.21
PGSC0003DMT400015058	Potato	plastid	62.78	74.83
Solyc11g068430.1.1	Tomato	nucleus	50.0	72.58
VIT_13s0147g00110.t01	Wine grape	plastid	66.67	71.43
PGSC0003DMT400067774	Potato	plastid	56.67	68.0
Zm00001d034760_P001	Maize	mitochondrion, plastid	55.56	65.79
Os07t0251500-00	Rice	cytosol	36.11	65.0
TraesCS1B01G416500.1	Wheat	cytosol	34.44	63.92
EER93144	Sorghum	plastid	53.33	63.58
Os03t0835900-01	Rice	plastid	52.78	62.09
TraesCS5D01G516100.1	Wheat	plastid	50.56	59.48
TraesCS5B01G516000.1	Wheat	plastid	49.44	57.79
VIT_12s0035g00270.t01	Wine grape	plastid	43.33	54.93
TraesCS5B01G517300.1	Wheat	plastid	40.56	48.34
TraesCS4A01G355200.1	Wheat	plastid	38.89	43.21
GSMUA_Achr11P...	Banana	plastid	62.22	42.42
TraesCS4A01G356200.1	Wheat	mitochondrion, plastid	49.44	42.38
HORVU5Hr1G117910.3	Barley	plastid	51.11	39.48
VIT_05s0020g03490.t01	Wine grape	plastid	23.89	29.25
VIT_02s0012g00980.t01	Wine grape	plastid	22.22	21.28

Protein Annotations

MapMan:1.1.5.1	EntrezGene:100251971	wikigene:100251971	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS
Gene3D:3.10.20.30	EMBL:AM445205	InterPro:Beta-grasp_dom_sf	ProteinID:CAN74125	ProteinID:CAN74125.1	ProteinID:CCB51657
ProteinID:CCB51657.1	UniProt:F6HHG1	EMBL:FN595757	InterPro:Fd_pln	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0022900	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537	GO:GO:0055114	InterPro:IPR001041
InterPro:IPR012675	EntrezGene:LOC100251971	wikigene:LOC100251971	PFAM:PF00111	ScanProsite:PS00197	PFscan:PS51085
PANTHER:PTHR43112	PANTHER:PTHR43112:SF12	SUPFAM:SSF54292	TIGR:TC55726	TIGRFAMs:TIGR02008	UniParc:UPI000210820B
ArrayExpress:VIT_06s0080g00410	EnsemblPlantsGene:VIT_06s0080g00410	EnsemblPlants:VIT_06s0080g00410.t01	RefSeq:XP_002275749	RefSeq:XP_002275749.2	:

Description

Ferredoxin [Source:UniProtKB/TrEMBL;Acc:F6HHG1]

Coordinates

chr6:+:20381443..20384757

Molecular Weight (calculated)

19709.5 Da

IEP (calculated)

6.765

GRAVY (calculated)

-0.046

Length

180 amino acids

Sequence
(BLAST)

001: MLLRSDHTLP HVFSFIFPRF SKLFVSRVIM STVNLPTHCM FRSATQNRIA SAFIRSPSSL GSVKSISKAF GLKSSPCFRA TAMAVYKIKL IGPEGEEHEF
101: DAPDDAYILD SAENAGVELP YSCRAGACST CAGQMVSGSV DQSDGSFLDD KQMEKGYLLT CISYPTSDCV IHTHKEGDLY

Best Arabidopsis Sequence Match ( AT2G27510.1 )
(BLAST)

001: MATVRISSTS MTKAVLRSQT TNKLITNKSY NLSVGSTKRV SRSFGLKCSA NSGGATMSAV YKVKLLGPDG QEDEFEVQDD QYILDAAEEA GVDLPYSCRA
101: GACSTCAGQI VSGNVDQSDG SFLEDSHLEK GYVLTCVAYP QSDCVIHTHK ETELF

Arabidopsis Description

FD3Ferredoxin [Source:UniProtKB/TrEMBL;Acc:A0A178VWS0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.