Factsheet for TraesCS5D01G516100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 16595579
plastid: 18419817

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G516000.1	Wheat	plastid	93.46	92.86
GSMUA_Achr11P...	Banana	cytosol	48.37	73.27
EER93144	Sorghum	plastid	70.59	71.52
Os03t0835900-01	Rice	plastid	71.24	71.24
Zm00001d034760_P001	Maize	mitochondrion, plastid	70.59	71.05
TraesCS4A01G356200.1	Wheat	mitochondrion, plastid	94.12	68.57
Solyc11g068430.1.1	Tomato	nucleus	55.56	68.55
PGSC0003DMT400015058	Potato	plastid	60.78	61.59
PGSC0003DMT400067774	Potato	plastid	57.52	58.67
HORVU5Hr1G117910.3	Barley	plastid	88.89	58.37
KRH25235	Soybean	plastid	57.52	58.28
KRH30423	Soybean	plastid	56.86	56.13
VIT_13s0147g00110.t01	Wine grape	plastid	59.48	54.17
TraesCS7D01G322000.1	Wheat	plastid	49.67	53.15
TraesCS2D01G292400.1	Wheat	plastid	50.98	52.0
TraesCS7D01G322100.1	Wheat	plastid	47.71	51.77
VIT_06s0080g00410.t01	Wine grape	plastid	59.48	50.56
TraesCS3D01G366600.1	Wheat	plastid	48.37	48.05
TraesCS1D01G275800.2	Wheat	plastid	52.29	30.42
TraesCS4D01G014200.1	Wheat	plastid	28.76	29.33
TraesCS4D01G025700.1	Wheat	plastid	27.45	22.83

Protein Annotations

MapMan:1.1.5.1	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30	InterPro:Beta-grasp_dom_sf
InterPro:Fd_pln	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0022900	GO:GO:0051536	GO:GO:0051537
InterPro:IPR001041	InterPro:IPR012675	PFAM:PF00111	ScanProsite:PS00197	PFscan:PS51085	PANTHER:PTHR43112
PANTHER:PTHR43112:SF4	SUPFAM:SSF54292	TIGRFAMs:TIGR02008	EnsemblPlantsGene:TraesCS5D01G516100	EnsemblPlants:TraesCS5D01G516100.1	TIGR:cd00207
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5D:+:538785964..538786425

Molecular Weight (calculated)

16277.0 Da

IEP (calculated)

4.665

GRAVY (calculated)

-0.227

Length

153 amino acids

Sequence
(BLAST)

001: MSTCTFATSC VLLGNARTTD VPQKALKSRV SFLGRGALQL PSLRSSSKKK LDVSAAATYK VKLVTPEGEE HEFEAPDDAY ILDSAETAGV ELPYSCRAGA
101: CSTCAGKIEA GAVDQSDGSF LDDAQQEEGY VLTCVAYPKS DCVIHTHKEG DLY

Best Arabidopsis Sequence Match ( AT2G27510.1 )
(BLAST)

001: MATVRISSTS MTKAVLRSQT TNKLITNKSY NLSVGSTKRV SRSFGLKCSA NSGGATMSAV YKVKLLGPDG QEDEFEVQDD QYILDAAEEA GVDLPYSCRA
101: GACSTCAGQI VSGNVDQSDG SFLEDSHLEK GYVLTCVAYP QSDCVIHTHK ETELF

Arabidopsis Description

FD3Ferredoxin [Source:UniProtKB/TrEMBL;Acc:A0A178VWS0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.