Factsheet for PGSC0003DMT400015058

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P00940_001	Banana	cytosol	51.66	79.59
PGSC0003DMT400067774	Potato	plastid	78.81	79.33
GSMUA_Achr11P...	Banana	cytosol	51.66	77.23
KRH30423	Soybean	plastid	70.2	68.39
KRH25235	Soybean	plastid	68.21	68.21
TraesCS1B01G416500.1	Wheat	cytosol	43.05	67.01
Os07t0251500-00	Rice	cytosol	44.37	67.0
EER93144	Sorghum	plastid	66.89	66.89
Zm00001d034760_P001	Maize	mitochondrion, plastid	66.89	66.45
Os03t0835900-01	Rice	plastid	66.89	66.01
PGSC0003DMT400060121	Potato	plastid	64.24	64.67
PGSC0003DMT400061612	Potato	plastid	63.58	64.0
VIT_13s0147g00110.t01	Wine grape	plastid	70.86	63.69
VIT_06s0080g00410.t01	Wine grape	plastid	74.83	62.78
TraesCS5D01G516100.1	Wheat	plastid	61.59	60.78
TraesCS5B01G516000.1	Wheat	plastid	61.59	60.39
PGSC0003DMT400011522	Potato	plastid	49.01	54.41
PGSC0003DMT400031198	Potato	cytosol, extracellular, plastid	50.33	52.78
PGSC0003DMT400087715	Potato	cytosol, plastid	34.44	50.0
TraesCS5B01G517300.1	Wheat	plastid	48.34	48.34
TraesCS4A01G355200.1	Wheat	plastid	47.02	43.83
TraesCS4A01G356200.1	Wheat	mitochondrion, plastid	60.93	43.81
HORVU5Hr1G117910.3	Barley	plastid	61.59	39.91
GSMUA_Achr11P...	Banana	plastid	66.89	38.26
PGSC0003DMT400086140	Potato	plastid	29.14	29.33
PGSC0003DMT400045201	Potato	plastid	29.8	23.56

Protein Annotations

MapMan:1.1.5.1	EntrezGene:102599873	InterPro:2Fe-2S_ferredoxin-like_sf	InterPro:2Fe-2S_ferredoxin-type	InterPro:2Fe2S_fd_BS	Gene3D:3.10.20.30
InterPro:Beta-grasp_dom_sf	InterPro:Fd_pln	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0009055	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0022900	GO:GO:0046872
GO:GO:0051536	GO:GO:0051537	GO:GO:0055114	InterPro:IPR001041	InterPro:IPR012675	UniProt:M1A5C8
PFAM:PF00111	EnsemblPlantsGene:PGSC0003DMG402005881	PGSC:PGSC0003DMG402005881	EnsemblPlants:PGSC0003DMT400015058	ScanProsite:PS00197	PFscan:PS51085
PANTHER:PTHR43112	PANTHER:PTHR43112:SF12	SUPFAM:SSF54292	TIGRFAMs:TIGR02008	UniParc:UPI000296F480	RefSeq:XP_006361079.1

Description

Ferredoxin-3, chloroplast [Source:PGSC_GENE;Acc:PGSC0003DMG402005881]

Coordinates

chr6:-:54800228..54802111

Molecular Weight (calculated)

15947.8 Da

IEP (calculated)

5.171

GRAVY (calculated)

-0.048

Length

151 amino acids

Sequence
(BLAST)

001: MSTIGLPPTC MVKTAPQTLR KSVFIKSPAS LGSVRSISKG FGLKASSGFR ASASAVYKVK LVCPEGVEHE FEASSDTYIL DAAENAGVEL PYSCRAGACS
101: TCAGKIVSGS VDQSDGSFLD DNQMEEGYVL TCVSYPTSDC VIHTHKESDL Y

Best Arabidopsis Sequence Match ( AT2G27510.1 )
(BLAST)

001: MATVRISSTS MTKAVLRSQT TNKLITNKSY NLSVGSTKRV SRSFGLKCSA NSGGATMSAV YKVKLLGPDG QEDEFEVQDD QYILDAAEEA GVDLPYSCRA
101: GACSTCAGQI VSGNVDQSDG SFLEDSHLEK GYVLTCVAYP QSDCVIHTHK ETELF

Arabidopsis Description

FD3Ferredoxin [Source:UniProtKB/TrEMBL;Acc:A0A178VWS0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.