Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- golgi 1
- cytosol 2
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400001613 | |
| PGSC0003DMT400032525 | |
| PGSC0003DMT400058521 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G10960.1 | PGSC0003DMT400001613 | AT3G47620.1 | 21798944 |
| AT1G60950.1 | PGSC0003DMT400032525 | AT4G22890.1 | 18243102 |
| AT1G60950.1 | PGSC0003DMT400058521 | AT4G22890.1 | 18243102 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g075160.1.1 | Tomato | plastid | 71.15 | 51.39 |
| PGSC0003DMT400031198 | Potato | cytosol, extracellular, plastid | 69.23 | 50.0 |
| PGSC0003DMT400011522 | Potato | plastid | 61.54 | 47.06 |
| Zm00001d035002_P001 | Maize | plastid | 56.73 | 42.75 |
| KRH43040 | Soybean | nucleus, plastid | 57.69 | 41.67 |
| VIT_12s0035g00270.t01 | Wine grape | plastid | 55.77 | 40.85 |
| KRH59154 | Soybean | nucleus, plastid | 57.69 | 40.82 |
| GSMUA_Achr5P01200_001 | Banana | plastid | 55.77 | 40.56 |
| EES13199 | Sorghum | plastid | 55.77 | 40.56 |
| EES13198 | Sorghum | plastid | 55.77 | 40.28 |
| Zm00001d035001_P001 | Maize | plastid | 57.69 | 40.0 |
| TraesCS7D01G322000.1 | Wheat | plastid | 54.81 | 39.86 |
| TraesCS7B01G226100.1 | Wheat | plastid | 54.81 | 39.86 |
| TraesCS7A01G325400.1 | Wheat | plastid | 54.81 | 39.86 |
| HORVU7Hr1G077740.1 | Barley | plastid | 54.81 | 39.86 |
| KXG24178 | Sorghum | plastid | 57.69 | 39.74 |
| Os08t0104600-02 | Rice | extracellular | 52.88 | 39.57 |
| AT1G60950.1 | Thale cress | plastid | 55.77 | 39.19 |
| AT1G10960.1 | Thale cress | plastid | 55.77 | 39.19 |
| HORVU7Hr1G077750.1 | Barley | plastid | 52.88 | 39.01 |
| TraesCS7D01G322100.1 | Wheat | plastid | 52.88 | 39.01 |
| TraesCS7B01G226200.1 | Wheat | plastid | 52.88 | 38.73 |
| TraesCS7A01G325500.1 | Wheat | plastid | 52.88 | 38.73 |
| Zm00001d035003_P001 | Maize | plastid | 51.92 | 38.57 |
| CDY20591 | Canola | plastid | 54.81 | 38.51 |
| CDY12877 | Canola | plastid | 53.85 | 37.84 |
| CDY03773 | Canola | plastid | 53.85 | 37.84 |
| Bra031471.1-P | Field mustard | plastid | 53.85 | 37.84 |
| Bra027109.1-P | Field mustard | plastid | 53.85 | 37.84 |
| CDY20975 | Canola | plastid | 53.85 | 37.84 |
| CDY44833 | Canola | plastid | 53.85 | 37.84 |
| CDY46194 | Canola | plastid | 53.85 | 37.84 |
| Bra018415.1-P | Field mustard | plastid | 52.88 | 37.16 |
| CDY54581 | Canola | plastid | 52.88 | 37.16 |
| CDY54579 | Canola | plastid | 52.88 | 37.16 |
| CDY19334 | Canola | plastid | 49.04 | 36.69 |
| CDX97925 | Canola | plastid | 51.92 | 36.49 |
| PGSC0003DMT400067774 | Potato | plastid | 51.92 | 36.0 |
| CDY33318 | Canola | plastid | 50.0 | 35.14 |
| PGSC0003DMT400015058 | Potato | plastid | 50.0 | 34.44 |
| Zm00001d049732_P001 | Maize | plastid | 50.0 | 33.55 |
| PGSC0003DMT400061612 | Potato | plastid | 46.15 | 32.0 |
| PGSC0003DMT400060121 | Potato | plastid | 46.15 | 32.0 |
| Bra040469.1-P | Field mustard | plastid | 50.0 | 29.89 |
| PGSC0003DMT400086140 | Potato | plastid | 34.62 | 24.0 |
| PGSC0003DMT400045201 | Potato | plastid | 31.73 | 17.28 |
Protein Annotations
| MapMan:1.1.5.1 | InterPro:2Fe-2S_ferredoxin-like_sf | InterPro:2Fe-2S_ferredoxin-type | InterPro:2Fe2S_fd_BS | Gene3D:3.10.20.30 | InterPro:Beta-grasp_dom_sf |
| InterPro:Fd_pln | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006091 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009055 |
| GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 | GO:GO:0022900 | GO:GO:0046872 | GO:GO:0051536 |
| GO:GO:0051537 | GO:GO:0055114 | InterPro:IPR001041 | InterPro:IPR012675 | UniProt:M1DEE2 | PFAM:PF00111 |
| EnsemblPlantsGene:PGSC0003DMG400037286 | PGSC:PGSC0003DMG400037286 | EnsemblPlants:PGSC0003DMT400087715 | ScanProsite:PS00197 | PFscan:PS51085 | PANTHER:PTHR43112 |
| PANTHER:PTHR43112:SF4 | SUPFAM:SSF54292 | TIGRFAMs:TIGR02008 | UniParc:UPI00029564C3 | : | : |
Description
Ferredoxin II [Source:PGSC_GENE;Acc:PGSC0003DMG400037286]
Coordinates
chr00:+:22172376..22172690
Molecular Weight (calculated)
11404.6 Da
IEP (calculated)
8.203
GRAVY (calculated)
-0.317
Length
104 amino acids
Sequence
(BLAST)
(BLAST)
001: SGRITCKATT YKVKLVTPKG RFEFNCPHNV NILDRALETG LDLPFTCKAG SCSSCVGKII AGTVDQSENS YLDDEDIKKG YVLTFVAYPK SNVTIHTNKE
101: KELG
101: KELG
001: MASTALSSAI VGTSFIRRSP APISLRSLPS ANTQSLFGLK SGTARGGRVT AMATYKVKFI TPEGELEVEC DDDVYVLDAA EEAGIDLPYS CRAGSCSSCA
101: GKVVSGSVDQ SDQSFLDDEQ IGEGFVLTCA AYPTSDVTIE THKEEDIV
101: GKVVSGSVDQ SDQSFLDDEQ IGEGFVLTCA AYPTSDVTIE THKEEDIV
Arabidopsis Description
FD2Ferredoxin [Source:UniProtKB/TrEMBL;Acc:A0A178W2W5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.