Factsheet for PGSC0003DMT400058521

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009192
PGSC0003DMT400011522
PGSC0003DMT400030843
PGSC0003DMT400031198
PGSC0003DMT400049986
PGSC0003DMT400087715

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22890.1	PGSC0003DMT400011522	AT1G60950.1	18243102
AT4G22890.1	PGSC0003DMT400031198	AT1G60950.1	18243102
AT4G22890.1	PGSC0003DMT400087715	AT1G60950.1	18243102
AT4G22890.1	PGSC0003DMT400030843	AT4G02770.1	18243102
AT4G22890.1	PGSC0003DMT400009192	AT5G66190.1	18243102
AT4G22890.1	PGSC0003DMT400049986	ATCG00720.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g080050.2.1	Tomato	plastid	82.19	85.39
PGSC0003DMT400032525	Potato	plastid	78.75	79.0
KRH26378	Soybean	plasma membrane	34.38	74.32
GSMUA_Achr4P28830_001	Banana	cytosol, peroxisome, plasma membrane	63.75	72.34
KRH77457	Soybean	plastid	70.62	71.52
Zm00001d034904_P001	Maize	plastid	50.94	71.18
VIT_02s0025g04710.t01	Wine grape	plastid	71.88	70.55
Bra019349.1-P	Field mustard	plastid	69.38	69.38
CDY68977	Canola	plastid	69.38	69.38
AT4G22890.1	Thale cress	plastid	70.0	69.14
KRH57278	Soybean	plastid	69.06	68.85
CDX94134	Canola	plastid	68.75	68.75
CDY41285	Canola	plastid	68.44	68.65
CDY10819	Canola	plastid	68.44	68.65
Bra013653.1-P	Field mustard	plastid	68.44	68.65
KRH04003	Soybean	plastid	70.94	68.37
CDY51552	Canola	plastid	68.12	68.12
Bra000757.1-P	Field mustard	plastid	68.12	68.12
CDX90812	Canola	plastid	68.12	68.12
GSMUA_Achr2P12240_001	Banana	plastid	67.19	68.04
AT4G11960.1	Thale cress	plastid	65.94	67.41
Zm00001d034900_P001	Maize	plastid	63.44	63.04
Os03t0857400-01	Rice	plasma membrane	63.75	62.96
Os08t0526300-02	Rice	plastid	64.69	62.92
TraesCS5D01G569800.1	Wheat	plastid	63.44	62.65
TraesCS5B01G560400.1	Wheat	plastid	63.12	62.15
KXG34948	Sorghum	plastid	64.38	62.05
TraesCS4A01G319000.1	Wheat	plastid	62.81	61.85
HORVU5Hr1G124210.2	Barley	plastid	62.19	61.04
Zm00001d019454_P001	Maize	plastid	63.75	60.9
KXG37086	Sorghum	plastid	61.56	48.52
Os08t0310500-00	Rice	plastid	9.38	22.9

Protein Annotations

EnsemblPlants:PGSC0003DMT400058521	EnsemblPlantsGene:PGSC0003DMG400022731	EntrezGene:102598666	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR31032	PANTHER:PTHR31032:SF1	PGSC:PGSC0003DMG400022731	RefSeq:XP_006358846.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0002956E93	UniProt:M1C2T1	MapMan:1.1.6.1.2	:	:	:

Description

PGR5 1A, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400022731]

Coordinates

chr8:+:53735299..53740498

Molecular Weight (calculated)

35994.7 Da

IEP (calculated)

5.105

GRAVY (calculated)

0.044

Length

320 amino acids

Sequence
(BLAST)

001: MATKLGFSIT SSKLFHAPFK RPIFSSSSSP RLPLIPFVAS RKLSIRRKLL ILSPKAAADQ PGQVKEEAEE DTKILQYCSL DRKEKKSMGE MEQEFLQALQ
101: SFYYEGKAIM SNEEFDNLKE ELMWEGSSVV MLSADEQRFL EASMAYVSGN PILTDQEFDK LKLKLKMDGS DIVVEGPRCS LRSRKVYSDL YIDYLKMFLL
201: NVPAAVVALG LFFFLDDLTG FEITYLLELP EPFSFIFVWF AALPFILWLS FTFTNIIVKD FLILKGPCPN CGTDNTSFFG TILSVSSGGK TNKVKCTNCA
301: TEMIYDSATR LITLPEGSSA

Best Arabidopsis Sequence Match ( AT4G22890.1 )
(BLAST)

001: MGSKMLFSLT SPRLFSAVSR KPSSSFSPSP PSPSSRTQWT QLSPGKSISL RRRVFLLPAK ATTEQSGPVG GDNVDSNVLP YCSINKAEKK TIGEMEQEFL
101: QALQSFYYDG KAIMSNEEFD NLKEELMWEG SSVVMLSSDE QRFLEASMAY VSGNPILNDE EYDKLKLKLK IDGSDIVSEG PRCSLRSKKV YSDLAVDYFK
201: MLLLNVPATV VALGLFFFLD DITGFEITYI MELPEPYSFI FTWFAAVPVI VYLALSITKL IIKDFLILKG PCPNCGTENT SFFGTILSIS SGGKTNTVKC
301: TNCGTAMVYD SGSRLITLPE GSQA

Arabidopsis Description

PGRL1APGR5-LIKE A [Source:UniProtKB/TrEMBL;Acc:A0A178UU76]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.