Subcellular Localization
min:
: max
Winner_takes_all: golgi, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 3
- golgi 3
- plastid 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400032525 | |
| PGSC0003DMT400058521 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| ATCG00720.1 | PGSC0003DMT400032525 | AT4G22890.1 | 18243102 |
| ATCG00720.1 | PGSC0003DMT400058521 | AT4G22890.1 | 18243102 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH75043 | Soybean | endoplasmic reticulum, mitochondrion, plastid, vacuole | 64.37 | 48.28 |
| CDX71257 | Canola | cytosol, plastid, vacuole | 39.08 | 34.69 |
| HORVU0Hr1G037920.1 | Barley | plasma membrane | 65.52 | 31.49 |
| TraesCS1A01G130200.1 | Wheat | mitochondrion | 45.98 | 27.97 |
| CAA33977 | Rice | plasma membrane | 67.82 | 27.44 |
| ATCG00720.1 | Thale cress | plasma membrane | 66.67 | 26.98 |
| EES02990 | Sorghum | cytosol, endoplasmic reticulum, plasma membrane | 66.67 | 25.0 |
| TraesCS6A01G192500.1 | Wheat | plasma membrane | 64.37 | 24.14 |
| HORVU1Hr1G003510.1 | Barley | extracellular, mitochondrion, peroxisome | 33.33 | 23.2 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 14.94 | 13.4 |
| HORVU0Hr1G034350.1 | Barley | endoplasmic reticulum, vacuole | 6.9 | 4.32 |
| HORVU6Hr1G049430.1 | Barley | endoplasmic reticulum, vacuole | 6.9 | 4.32 |
| Solyc01g007540.2.1 | Tomato | plastid | 6.9 | 4.32 |
| GRMZM5G884960_P01 | Maize | plastid | 6.9 | 3.45 |
| TraesCS5D01G009100.1 | Wheat | golgi, plastid, vacuole | 2.3 | 2.15 |
| Solyc07g032450.1.1 | Tomato | plasma membrane, plastid, vacuole | 1.15 | 1.45 |
Protein Annotations
| Gene3D:1.20.810.10 | MapMan:35.1 | InterPro:Cyt_B6_PetB | InterPro:Cyt_b/b6_N | InterPro:Cytb/b6-like_sf | InterPro:Di-haem_cyt_TM |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005506 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006091 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009055 |
| GO:GO:0009507 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009987 | GO:GO:0015979 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016491 | GO:GO:0020037 | GO:GO:0022900 | GO:GO:0022904 |
| GO:GO:0045158 | GO:GO:0046872 | GO:GO:0055114 | InterPro:IPR005797 | InterPro:IPR027387 | UniProt:M1BPN1 |
| PFAM:PF00033 | EnsemblPlantsGene:PGSC0003DMG400019419 | PGSC:PGSC0003DMG400019419 | EnsemblPlants:PGSC0003DMT400049986 | PFscan:PS51002 | PANTHER:PTHR19271 |
| PANTHER:PTHR19271:SF8 | SUPFAM:SSF81342 | TMHMM:TMhelix | UniParc:UPI000296D43C | : | : |
Description
Cytochrome b6 [Source:PGSC_GENE;Acc:PGSC0003DMG400019419]
Coordinates
chr10:+:6026372..6026727
Molecular Weight (calculated)
9462.7 Da
IEP (calculated)
4.829
GRAVY (calculated)
0.594
Length
87 amino acids
Sequence
(BLAST)
(BLAST)
1: MYFVCISPAD LKKPRELTWV TGVVLAVLTA SFGVTGYSLP WDQIGYWAVK IVTGVPDAIP VIGSIEKGSI SFLTVSREEM GNMLNII
001: MSKVYDWFEE RLEIQAIADD ITSKYVPPHV NIFYCLGGIT LTCFLVQVAT GFAMTFYYRP TVTEAFASVQ YIMTEANFGW LIRSVHRWSA SMMVLMMILH
101: VFRVYLTGGF KKPRELTWVT GVVLGVLTAS FGVTGYSLPW DQIGYWAVKI VTGVPDAIPV IGSPLVELLR GSASVGQSTL TRFYSLHTFV LPLLTAVFML
201: MHFLMIRKQG ISGPL
101: VFRVYLTGGF KKPRELTWVT GVVLGVLTAS FGVTGYSLPW DQIGYWAVKI VTGVPDAIPV IGSPLVELLR GSASVGQSTL TRFYSLHTFV LPLLTAVFML
201: MHFLMIRKQG ISGPL
Arabidopsis Description
PETBCytochrome b6 [Source:UniProtKB/Swiss-Prot;Acc:P56773]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.