Factsheet for HORVU1Hr1G003510.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, extracellular

Predictor Summary:

plastid 1
peroxisome 1
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion, peroxisome
Any Predictor:	extracellular, peroxisome, plastid
iPSORT:	plastid
MultiLoc:	peroxisome
WoLF PSORT:	extracellular
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G124210.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00720.1	HORVU5Hr1G124210.2	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G037920.1	Barley	plasma membrane	69.6	48.07
ATCG00720.1	Thale cress	plasma membrane	69.6	40.47
HORVU6Hr1G049420.1	Barley	mitochondrion	71.2	38.36
AGP50784	Barley	plastid	71.2	38.36
HORVU5Hr1G065020.1	Barley	golgi, mitochondrion, plasma membrane	70.4	37.93
HORVU2Hr1G062090.1	Barley	plasma membrane	68.8	37.07
PGSC0003DMT400049986	Potato	cytosol, extracellular, golgi	23.2	33.33
GSMUA_AchrUn_...	Banana	mitochondrion	24.0	30.93
HORVU1Hr1G063040.1	Barley	plastid	40.8	29.65
HORVU7Hr1G052180.1	Barley	plastid	40.8	29.65
Solyc07g032450.1.1	Tomato	plasma membrane, plastid, vacuole	15.2	27.54
CDX71257	Canola	cytosol, plastid, vacuole	7.2	9.18
HORVU3Hr1G045040.1	Barley	cytosol	15.2	8.96
HORVU5Hr1G072320.1	Barley	golgi, mitochondrion, plasma membrane	14.4	7.11
HORVU0Hr1G034150.1	Barley	golgi, mitochondrion, plasma membrane	16.0	7.04
HORVU1Hr1G009360.1	Barley	plasma membrane	15.2	6.4
HORVU7Hr1G044370.1	Barley	plasma membrane	15.2	6.4
HORVU3Hr1G040840.1	Barley	plasma membrane	16.0	5.87
HORVU0Hr1G034350.1	Barley	endoplasmic reticulum, vacuole	6.4	5.76
HORVU6Hr1G049430.1	Barley	endoplasmic reticulum, vacuole	6.4	5.76
HORVU1Hr1G045710.1	Barley	extracellular	3.2	5.56
BAV58143	Barley	mitochondrion, plasma membrane	16.0	5.03

Protein Annotations

Gene3D:1.20.810.10	MapMan:35.1	UniProt:A0A287EHH9	InterPro:Cyt_B6_PetB	InterPro:Cyt_b/b6_N	InterPro:Cytb/b6-like_sf
InterPro:Di-haem_cyt_TM	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016491	GO:GO:0020037	GO:GO:0022900	GO:GO:0022904	GO:GO:0045158
EnsemblPlantsGene:HORVU1Hr1G003510	EnsemblPlants:HORVU1Hr1G003510.1	InterPro:IPR005797	InterPro:IPR027387	PFAM:PF00033	PFscan:PS51002
PANTHER:PTHR19271	PANTHER:PTHR19271:SF8	SUPFAM:SSF81342	TMHMM:TMhelix	UniParc:UPI000B46F85D	:

Description

No Description!

Coordinates

chrchr1H:+:7834783..7835203

Molecular Weight (calculated)

14509.2 Da

IEP (calculated)

11.240

GRAVY (calculated)

0.241

Length

125 amino acids

Sequence
(BLAST)

001: MTFYYRPTVT EAFSSVQYIM TEANFGWLIR SVHRWSASMM VLMMILHVFR VYLTGGFKKP RELTWVTGVV LAVLTASFGV TGYSLRDPRM PILARIVRKC
101: NSVFKQLFRV PRAPCTACWK TRCRT

Best Arabidopsis Sequence Match ( ATCG00720.1 )
(BLAST)

001: MSKVYDWFEE RLEIQAIADD ITSKYVPPHV NIFYCLGGIT LTCFLVQVAT GFAMTFYYRP TVTEAFASVQ YIMTEANFGW LIRSVHRWSA SMMVLMMILH
101: VFRVYLTGGF KKPRELTWVT GVVLGVLTAS FGVTGYSLPW DQIGYWAVKI VTGVPDAIPV IGSPLVELLR GSASVGQSTL TRFYSLHTFV LPLLTAVFML
201: MHFLMIRKQG ISGPL

Arabidopsis Description

PETBCytochrome b6 [Source:UniProtKB/Swiss-Prot;Acc:P56773]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.