Factsheet for HORVU2Hr1G062090.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G124210.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00720.1	HORVU5Hr1G124210.2	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75043	Soybean	endoplasmic reticulum, mitochondrion, plastid, vacuole	44.83	89.66
CAA33977	Rice	plasma membrane	76.29	82.33
ATCG00720.1	Thale cress	plasma membrane	75.43	81.4
AGP50784	Barley	plastid	77.59	77.59
HORVU6Hr1G049420.1	Barley	mitochondrion	77.59	77.59
CDX71257	Canola	cytosol, plastid, vacuole	32.76	77.55
GRMZM5G800780_P01	Maize	plastid	77.16	77.16
HORVU5Hr1G065020.1	Barley	golgi, mitochondrion, plasma membrane	77.16	77.16
EES02990	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	77.16	77.16
HORVU0Hr1G037920.1	Barley	plasma membrane	59.91	76.8
HORVU7Hr1G052180.1	Barley	plastid	51.29	69.19
HORVU1Hr1G063040.1	Barley	plastid	51.29	69.19
HORVU1Hr1G003510.1	Barley	extracellular, mitochondrion, peroxisome	37.07	68.8
HORVU1Hr1G045710.1	Barley	extracellular	10.78	34.72
HORVU5Hr1G072320.1	Barley	golgi, mitochondrion, plasma membrane	19.83	18.18
HORVU0Hr1G034150.1	Barley	golgi, mitochondrion, plasma membrane	20.69	16.9
HORVU3Hr1G045040.1	Barley	cytosol	15.09	16.51
HORVU1Hr1G009360.1	Barley	plasma membrane	20.69	16.16
HORVU7Hr1G044370.1	Barley	plasma membrane	20.26	15.82
HORVU3Hr1G040840.1	Barley	plasma membrane	18.53	12.61
BAV58143	Barley	mitochondrion, plasma membrane	20.69	12.06
HORVU6Hr1G049430.1	Barley	endoplasmic reticulum, vacuole	6.47	10.79
HORVU0Hr1G034350.1	Barley	endoplasmic reticulum, vacuole	6.47	10.79

Protein Annotations

Gene3D:1.20.810.10	MapMan:35.1	InterPro:Cyt_B6_PetB	InterPro:Cyt_b/b6_N	InterPro:Cytb/b6-like_sf	InterPro:Di-haem_cyt_TM
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575	GO:GO:0006091
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016491	GO:GO:0020037	GO:GO:0022900	GO:GO:0022904	GO:GO:0045158	EnsemblPlantsGene:HORVU2Hr1G062090
EnsemblPlants:HORVU2Hr1G062090.1	InterPro:IPR005797	InterPro:IPR027387	PFAM:PF00033	PIRSF:PIRSF000032	PFscan:PS51002
PANTHER:PTHR19271	PANTHER:PTHR19271:SF8	SUPFAM:SSF81342	TMHMM:TMhelix	SEG:seg	:

Description

No Description!

Coordinates

chrchr2H:-:419367690..419368388

Molecular Weight (calculated)

22027.5 Da

IEP (calculated)

9.603

GRAVY (calculated)

0.631

Length

232 amino acids

Sequence
(BLAST)

001: THFGLSMDIG SSXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXVNIF YCLGGITLTC FLVQVATGFA MTFYYRPTVT EAFSSVQYIM TEAKFGWLIR
101: SVHQWSASMM VLMMILHVFR VYLTGGFKKP RELTWVTGVV LAVLTASFGV TGYSLPWDQI GYWAVKIVTG VPDAILVIGS PLVELFRGSA SVGQSTLTRF
201: YSLHTFVLPL LTVVFMLMHF PMIRKQGILG PL

Best Arabidopsis Sequence Match ( ATCG00720.1 )
(BLAST)

001: MSKVYDWFEE RLEIQAIADD ITSKYVPPHV NIFYCLGGIT LTCFLVQVAT GFAMTFYYRP TVTEAFASVQ YIMTEANFGW LIRSVHRWSA SMMVLMMILH
101: VFRVYLTGGF KKPRELTWVT GVVLGVLTAS FGVTGYSLPW DQIGYWAVKI VTGVPDAIPV IGSPLVELLR GSASVGQSTL TRFYSLHTFV LPLLTAVFML
201: MHFLMIRKQG ISGPL

Arabidopsis Description

PETBCytochrome b6 [Source:UniProtKB/Swiss-Prot;Acc:P56773]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.