Factsheet for HORVU5Hr1G065020.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, golgi

Predictor Summary:

golgi 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, mitochondrion, plasma membrane
Any Predictor:	golgi, plasma membrane
MultiLoc:	golgi
WoLF PSORT:	plasma membrane
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G124210.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00720.1	HORVU5Hr1G124210.2	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AGP50784	Barley	plastid	99.14	99.14
HORVU6Hr1G049420.1	Barley	mitochondrion	99.14	99.14
CAA33977	Rice	plasma membrane	90.95	98.14
EES02990	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	97.84	97.84
GRMZM5G800780_P01	Maize	plastid	97.84	97.84
ATCG00720.1	Thale cress	plasma membrane	90.09	97.21
TraesCS6A01G192500.1	Wheat	plasma membrane	96.98	96.98
TraesCS5D01G221600.1	Wheat	plasma membrane	94.4	96.48
KRH75043	Soybean	endoplasmic reticulum, mitochondrion, plastid, vacuole	45.69	91.38
TraesCS1A01G130200.1	Wheat	mitochondrion	52.59	85.31
CDX71257	Canola	cytosol, plastid, vacuole	34.91	82.65
HORVU0Hr1G037920.1	Barley	plasma membrane	61.64	79.01
HORVU2Hr1G062090.1	Barley	plasma membrane	77.16	77.16
HORVU1Hr1G063040.1	Barley	plastid	53.02	71.51
HORVU7Hr1G052180.1	Barley	plastid	53.02	71.51
HORVU1Hr1G003510.1	Barley	extracellular, mitochondrion, peroxisome	37.93	70.4
HORVU1Hr1G045710.1	Barley	extracellular	11.21	36.11
HORVU5Hr1G072320.1	Barley	golgi, mitochondrion, plasma membrane	21.12	19.37
HORVU0Hr1G034150.1	Barley	golgi, mitochondrion, plasma membrane	21.98	17.96
HORVU3Hr1G045040.1	Barley	cytosol	15.95	17.45
HORVU1Hr1G009360.1	Barley	plasma membrane	21.98	17.17
HORVU7Hr1G044370.1	Barley	plasma membrane	21.55	16.84
HORVU3Hr1G040840.1	Barley	plasma membrane	19.4	13.2
BAV58143	Barley	mitochondrion, plasma membrane	21.98	12.81
HORVU6Hr1G049430.1	Barley	endoplasmic reticulum, vacuole	7.33	12.23
HORVU0Hr1G034350.1	Barley	endoplasmic reticulum, vacuole	7.33	12.23

Protein Annotations

MapMan:1.1.2.2	Gene3D:1.20.810.10	UniProt:A0A287RJX8	InterPro:Cyt_B6_PetB	InterPro:Cyt_b/b6_N	InterPro:Cytb/b6-like_sf
InterPro:Di-haem_cyt_TM	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016491	GO:GO:0020037	GO:GO:0022900	GO:GO:0022904	GO:GO:0045158
EnsemblPlantsGene:HORVU5Hr1G065020	EnsemblPlants:HORVU5Hr1G065020.1	InterPro:IPR005797	InterPro:IPR027387	HAMAP:MF_00633	PFAM:PF00033
PIRSF:PIRSF000032	PFscan:PS51002	PANTHER:PTHR19271	PANTHER:PTHR19271:SF8	SUPFAM:SSF81342	TMHMM:TMhelix
UniParc:UPI000B4694B7	:	:	:	:	:

Description

No Description!

Coordinates

chrchr5H:-:498734971..498735669

Molecular Weight (calculated)

26008.2 Da

IEP (calculated)

9.418

GRAVY (calculated)

0.524

Length

232 amino acids

Sequence
(BLAST)

001: MKFSYTALRG GLGLVTYLNK VYDWFEERLE IQAIADDITS KYVPPHVNIF YCLGGITLTC FLVQVATGFA MTFYYRPTVT EAFSSVQYIM TEANFGWLIR
101: SVHRWSASMM VLMMILHVFR VYLTGGFKKP RELTWVTGAV LAVLTASFGV TGYSLPWDQI GYWAVKIVTG VPDAIPVIGS PLVELLRGSA SVGQSTLTRF
201: YSLHTFVLPL LTAVFMLMHF PMIRKQGISG PL

Best Arabidopsis Sequence Match ( ATCG00720.1 )
(BLAST)

001: MSKVYDWFEE RLEIQAIADD ITSKYVPPHV NIFYCLGGIT LTCFLVQVAT GFAMTFYYRP TVTEAFASVQ YIMTEANFGW LIRSVHRWSA SMMVLMMILH
101: VFRVYLTGGF KKPRELTWVT GVVLGVLTAS FGVTGYSLPW DQIGYWAVKI VTGVPDAIPV IGSPLVELLR GSASVGQSTL TRFYSLHTFV LPLLTAVFML
201: MHFLMIRKQG ISGPL

Arabidopsis Description

PETBCytochrome b6 [Source:UniProtKB/Swiss-Prot;Acc:P56773]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.