CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, plastid, vacuole

Predictor Summary:

plastid 3
extracellular 2
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, mitochondrion, plastid, vacuole
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH04003
KRH26378
KRH57278
KRH77457

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00720.1	KRH04003	AT4G22890.1	18243102
ATCG00720.1	KRH26378	AT4G22890.1	18243102
ATCG00720.1	KRH57278	AT4G22890.1	18243102
ATCG00720.1	KRH77457	AT4G22890.1	18243102

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049986	Potato	cytosol, extracellular, golgi	48.28	64.37
TraesCS1A01G130200.1	Wheat	mitochondrion	74.14	60.14
Solyc01g007530.2.1	Tomato	plastid	92.24	50.23
CDX71257	Canola	cytosol, plastid, vacuole	42.24	50.0
CAA33977	Rice	plasma membrane	92.24	49.77
ATCG00720.1	Thale cress	plasma membrane	91.38	49.3
AGP50784	Barley	plastid	92.24	46.12
HORVU6Hr1G049420.1	Barley	mitochondrion	92.24	46.12
EES02990	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	91.38	45.69
GRMZM5G800780_P01	Maize	plastid	91.38	45.69
HORVU5Hr1G065020.1	Barley	golgi, mitochondrion, plasma membrane	91.38	45.69
TraesCS5D01G221600.1	Wheat	plasma membrane	88.79	45.37
TraesCS1D01G183000.1	Wheat	plastid	90.52	45.26
HORVU2Hr1G062090.1	Barley	plasma membrane	89.66	44.83
TraesCS6A01G192500.1	Wheat	plasma membrane	88.79	44.4
GSMUA_AchrUn_...	Banana	mitochondrion	28.45	34.02
Solyc01g007540.2.1	Tomato	plastid	9.48	7.91
Solyc07g032450.1.1	Tomato	plasma membrane, plastid, vacuole	4.31	7.25
KRH57909	Soybean	mitochondrion	20.69	6.56
KRH48941	Soybean	mitochondrion	2.59	1.75

Protein Annotations

Gene3D:1.20.810.10	MapMan:35.1	EMBL:ACUP02000110	InterPro:Cyt_B6_PetB	InterPro:Cyt_b/b6_N	InterPro:Cytb/b6-like_sf
InterPro:Di-haem_cyt_TM	EnsemblPlantsGene:GLYMA_01G058600	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0009055	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0020037
GO:GO:0022900	GO:GO:0022904	GO:GO:0045158	GO:GO:0046872	GO:GO:0055114	UniProt:I1J601
InterPro:IPR005797	InterPro:IPR027387	EnsemblPlants:KRH75043	ProteinID:KRH75043	ProteinID:KRH75043.1	PFAM:PF00033
PFscan:PS51002	PANTHER:PTHR19271	PANTHER:PTHR19271:SF8	SUPFAM:SSF81342	TMHMM:TMhelix	UniParc:UPI000296391F

Description

hypothetical protein

Coordinates

chr1:-:7754927..7755389

Molecular Weight (calculated)

12744.8 Da

IEP (calculated)

10.375

GRAVY (calculated)

0.533

Length

116 amino acids

Sequence
(BLAST)

001: MTEANFGWLI RSVHQWSASV MVLMMILHVF RVYLTGGFKK PRELTWVTGV VLAVLTASFG VTGYSLPWDQ IGYWAVKIVT GVPDAIPVIG SSLVELLRGS
101: SSVGQSTLTR IYKLKG

Best Arabidopsis Sequence Match ( ATCG00720.1 )
(BLAST)

001: MSKVYDWFEE RLEIQAIADD ITSKYVPPHV NIFYCLGGIT LTCFLVQVAT GFAMTFYYRP TVTEAFASVQ YIMTEANFGW LIRSVHRWSA SMMVLMMILH
101: VFRVYLTGGF KKPRELTWVT GVVLGVLTAS FGVTGYSLPW DQIGYWAVKI VTGVPDAIPV IGSPLVELLR GSASVGQSTL TRFYSLHTFV LPLLTAVFML
201: MHFLMIRKQG ISGPL

Arabidopsis Description

PETBCytochrome b6 [Source:UniProtKB/Swiss-Prot;Acc:P56773]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.